PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678343712

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HSF

Protein Properties

Length: 365aa MW: 42009 Da PI: 6.3327

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678343712	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.6	2.6e-35	53	145	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Flkk++e+++d++++++isws ++ sfvv+d++ f++++LpkyFkh+nf+SFvRQLn+Y F+k+++e+ weF+++ F++gkk+ll++ik 678343712 53 FLKKTFEMVDDPNTNSIISWSPSKASFVVWDPHAFSSDLLPKYFKHNNFSSFVRQLNTYRFRKIDSER---------WEFANEGFQQGKKNLLKYIK 140 9******************999*************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ 678343712 141 RRKQS 145 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-37	49	142	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.85E-33	49	142	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.2E-55	49	142	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	53	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.2E-31	53	142	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	91	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	92	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	104	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MAGVFSVKQE FLEEQDSVAG GDGSGSYERR RRRWSTLPID GLKENETLQP PPFLKKTFEM 60 VDDPNTNSII SWSPSKASFV VWDPHAFSSD LLPKYFKHNN FSSFVRQLNT YRFRKIDSER 120 WEFANEGFQQ GKKNLLKYIK RRKQSSPIIM QQGASKSWFD SSRYGVEVEL EKLRVDRIAL 180 QTEVFKLKQN QETMQHYVMG IAKRLQDTEM KQKHTLKFMM KSLRNPSFLQ HSFEKAQKKR 240 RIESSFVNEP TEPDHDQRPG AQELPTIPSE IHTHFSTSDE QKAENSSEIT SLDSCSENFV 300 LWEKLMEDGM IFDEETAAAA AAADSNNLTN ELSECGMKLD SLWGDEYGSS YGTNCWSPSL 360 RTLGS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MAGVFSVKQE FLEEQDSVAG GDGSGSYERR RRRWSTLPID GLKENETLQP PPFLKKTFEM  60
VDDPNTNSII SWSPSKASFV VWDPHAFSSD LLPKYFKHNN FSSFVRQLNT YRFRKIDSER  120
WEFANEGFQQ GKKNLLKYIK RRKQSSPIIM QQGASKSWFD SSRYGVEVEL EKLRVDRIAL  180
QTEVFKLKQN QETMQHYVMG IAKRLQDTEM KQKHTLKFMM KSLRNPSFLQ HSFEKAQKKR  240
RIESSFVNEP TEPDHDQRPG AQELPTIPSE IHTHFSTSDE QKAENSSEIT SLDSCSENFV  300
LWEKLMEDGM IFDEETAAAA AAADSNNLTN ELSECGMKLD SLWGDEYGSS YGTNCWSPSL  360
RTLGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-22	51	145	18	123	Heat shock factor protein 1
5d5u_B	1e-22	51	142	27	129	Heat shock factor protein 1
5d5v_B	1e-22	51	142	27	129	Heat shock factor protein 1
5d5v_D	1e-22	51	142	27	129	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	LKYIKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678343712

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022866652.1	1e-104	heat shock factor protein HSF30-like
TrEMBL	A0A2G9GAA5	1e-109	A0A2G9GAA5_9LAMI; Heat shock transcription factor
STRING	XP_009606363.1	3e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5681	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-65	heat shock transcription factor A2