PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678343627 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | WRKY | ||||||||
Protein Properties | Length: 260aa MW: 29166.7 Da PI: 6.1085 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.3e-29 | 92 | 149 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers +d +++ +tY+ eHnh+ 678343627 92 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSLHDATALMVTYSCEHNHP 149 99************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 82 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-26 | 84 | 151 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.8 | 85 | 151 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-34 | 90 | 150 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.0E-25 | 92 | 149 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEGGVDRGHE EEDSPTLTTT PEDAADSALP DDERIHAPAV KKRSGFLTAR FAFGINEHYF 60 SDRRRGREKR VVTVRMDVDG LRSKTEVHPP PDSWSWRKYG QKPIKGSPYP RGYYRCSSSK 120 GCPARKQVER SLHDATALMV TYSCEHNHPL PSVIVKPHRL SRAPSPSFPE SASSLIQAER 180 DTAAAEDGFA EFLGEFGWVC EVESTMMTET TFVGPSWVNA GMEMFMPIGE EDKLLFGDLG 240 DLPEYSIVFR RCVKETAFSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 92 | 151 | 16 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678343627 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083309.1 | 2e-92 | probable WRKY transcription factor 69 | ||||
Swissprot | Q93WV5 | 8e-51 | WRK69_ARATH; Probable WRKY transcription factor 69 | ||||
TrEMBL | A0A2G9HZX0 | 6e-88 | A0A2G9HZX0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00241.1.p | 2e-85 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7468 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 4e-53 | WRKY DNA-binding protein 69 |
Publications ? help Back to Top | |||
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