PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678343482
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 319aa    MW: 35759.2 Da    PI: 10.3901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678343482genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-20123172255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr ++ +gr++AeIrdp +   ++r++lg+f+taeeAa+a++aa+++++g
  678343482 123 HYRGVRKRP-WGRFAAEIRDPDK---KRRVWLGTFDTAEEAARAYDAAAREFRG 172
                6********.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-31123179IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22123180IPR016177DNA-binding domain
SMARTSM003802.9E-37123186IPR001471AP2/ERF domain
CDDcd000182.34E-18123179No hitNo description
PROSITE profilePS5103223.868123180IPR001471AP2/ERF domain
PfamPF008471.4E-14123172IPR001471AP2/ERF domain
PRINTSPR003674.6E-11124135IPR001471AP2/ERF domain
PRINTSPR003674.6E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDHRRGLVSP ESTREKGPPF PRNATVYSSK LHALDAISQI RSLEAQTMFH RRLSRTFPTW  60
KSPILGRPVR PAESNRFPKM RYPPENWVSV SRSPRSTVRF PTEMSMKVRE MEQRGGGETA  120
EVHYRGVRKR PWGRFAAEIR DPDKKRRVWL GTFDTAEEAA RAYDAAAREF RGQKAKTNFL  180
LASETVVRSP SESSTVESSC ADNNTRRPPD SPLVTIAAPS VYPFFRTQPA PLSFLHNNNN  240
NNPQIFVFQA LPHPPTYNTP AAPAIVAGIP RGGALGSDSD SSSVVDENHF DGPNPRRLLD  300
LDLNHPPPLE PDTLNLEAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20111179171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127146RKRPWGRFAAEIRDPDKKRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678343482
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831710.13e-45PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ404771e-41ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLA0A2G9HCE22e-53A0A2G9HCE2_9LAMI; Uncharacterized protein
STRINGMigut.M00159.1.p1e-44(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-20erf domain protein 9
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]