PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678343409
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 223aa    MW: 24490.3 Da    PI: 8.9202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678343409genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-203078355
        AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++ a+++l+g
  678343409 30 FRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDSAEDAARAYDSAARSLRG 78
               8*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-292986No hitNo description
SMARTSM003802.3E-362992IPR001471AP2/ERF domain
PROSITE profilePS5103223.092986IPR001471AP2/ERF domain
PfamPF008471.9E-122978IPR001471AP2/ERF domain
PRINTSPR003672.3E-103041IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-313086IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-223087IPR016177DNA-binding domain
PRINTSPR003672.3E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRRGRAAARK SEAVGGGLVD GSGVSKEIRF RGVRKRPWGR YAAEIRDPWK KTRVWLGTFD  60
SAEDAARAYD SAARSLRGPK AKTNFPLPAN GGIFPDFNPQ NPNQAPIVNY HNDPFTGQGF  120
YTQDQQTIAQ QRPTSSGMSS TVESFSRPRQ QVQPPLPLRR FPRSPPIAPD DCHSDCDSSS  180
SVIDDADCDM AYSSGKKFLP FDLNAIPTVD ADAEELACTA LRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-212192578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678343409
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095450.12e-93ethylene-responsive transcription factor 3-like
SwissprotO803392e-48ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A2G9I2B85e-96A0A2G9I2B8_9LAMI; Uncharacterized protein
STRINGMigut.M01719.1.p1e-90(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.13e-26ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]