PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678342664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 341aa MW: 39008.2 Da PI: 7.2354 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.6 | 2.6e-31 | 26 | 75 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ 678342664 26 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 75 79***********************************************8 PP | |||||||
2 | K-box | 107.9 | 1.1e-35 | 191 | 287 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ s +ea+a+++qqe++kL+++i+nLq+ +R++lGe+L+ L+l+eL++Le+++e++++kiRskKnell+++ie++qk+e el+++n+ Lr+k++e 678342664 191 SNQGSISEANAQYYQQEASKLRANISNLQNHNRNMLGESLGGLKLNELKNLETKVERGISKIRSKKNELLFAEIEYMQKREMELHHNNQFLRAKIAE 287 3333499***************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.786 | 18 | 78 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-40 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.12E-29 | 20 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.13E-38 | 20 | 81 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 20 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-33 | 20 | 40 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-26 | 27 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-33 | 40 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-33 | 55 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.1E-26 | 199 | 285 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.471 | 201 | 291 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MELQSDITGE EVSSERKVSR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV 60 ALIVFSSRGR LYEYANHRMK GPGEFCSDHP VAFTAVENVV DEIKVSEMQL SESEFESDSS 120 SSSSSSSPLC VTSWKIMSQN IIWLSKGLIF QSLLVYGFYL YLTVIHMPLP LFNCCSVKET 180 IERYKKATDS SNQGSISEAN AQYYQQEASK LRANISNLQN HNRNMLGESL GGLKLNELKN 240 LETKVERGIS KIRSKKNELL FAEIEYMQKR EMELHHNNQF LRAKIAETER VHQHMNLMPG 300 SCPGFELVHP QPYDTTEYLQ NTLQQNNESY PRQQAPSLQL V |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-18 | 18 | 79 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-18 | 18 | 79 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-18 | 18 | 79 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-18 | 18 | 79 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-18 | 18 | 79 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-18 | 18 | 79 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-18 | 18 | 79 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-18 | 18 | 79 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-18 | 18 | 79 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-18 | 18 | 79 | 1 | 62 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678342664 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022852034.1 | 8e-81 | floral homeotic protein AGAMOUS-like isoform X4 | ||||
Refseq | XP_022852042.1 | 3e-81 | floral homeotic protein AGAMOUS-like isoform X7 | ||||
Swissprot | Q40168 | 2e-74 | AG_SOLLC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | M8BNZ0 | 2e-84 | M8BNZ0_AEGTA; MADS-box transcription factor 3 | ||||
STRING | EMT23538 | 4e-85 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-46 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|