PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678342285
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 461aa    MW: 48688 Da    PI: 6.9607
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678342285genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.42.2e-37852442135
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssaseceaesssssasnsssg......... 88 
                 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i el+      + ++ ++ ++e++ss++++++ g         
  678342285  85 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSIAELPPIpnafPETP-NQLSDEKKSSTGGSDQLGldsaevemd 183
                689************************************************************954331111.122333333333333333778888899 PP

        TCP  89 .............kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                                ks+a+s+ s++s+ s l+l++ e r kar+ra+er +ek + k++
  678342285 184 gcgsgvdpsfrqqLVTKSSACSSASETSKGSGLSLSRsEIRIKARERAKERVAEKEKEKEN 244
                99999999999875566666999999999999*****999**************9998855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3986241IPR005333Transcription factor, TCP
PROSITE profilePS5136931.53187145IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.989221240IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGGDGIRCKF QRGNNGDGRL ESGNEKMEDQ FQDDEAEGES ERGSGAKIGG GGGGGGGGGG  60
VEFTAAMGRF YAWPSSRIVR VSRASGGKDR HSKVLTSKGL RDRRVRLSVN TAIQFYDLQD  120
RLGYDQPSKA VEWLLKAAAS SIAELPPIPN AFPETPNQLS DEKKSSTGGS DQLGLDSAEV  180
EMDGCGSGVD PSFRQQLVTK SSACSSASET SKGSGLSLSR SEIRIKARER AKERVAEKEK  240
EKENASMNKN NPISRTTSFT ELLNGVGGGI NKSGSSPNNS SVHENSSSGA AADGTATDSS  300
FFLKSSKQWD YLCSGLLTPP PSGRGGEIHS RFYSPMFGLA AGDHQPELQQ YSFVPDHLVQ  360
VVNGSNINTN QHNGSSHEYS NLTFSISSSA ASSGLAGFNR GTLQSNSSSP SLLPHIQSFS  420
DGSPVSFFAG VDNQHHQFLA GYDAGSDNGS RHSAHRGRGN N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2392146155Putative transcription factor PCF6
5zkt_B4e-2392146155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678342285
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096599.11e-171transcription factor TCP2-like
RefseqXP_011096600.11e-171transcription factor TCP2-like
RefseqXP_020554008.11e-171transcription factor TCP2-like
TrEMBLA0A022QZI81e-156A0A022QZI8_ERYGU; Uncharacterized protein
STRINGMigut.M00891.1.p1e-162(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2