PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678339919

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TCP

Protein Properties

Length: 274aa MW: 28935 Da PI: 10.3328

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678339919	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.8	7.6e-38	31	163	2	118
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg...... 88 gkk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++sss + 678339919 31 QGKKPSAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvassgaRNSSSSM-------Svsfdhk 123 689*************************************************************9999977744433223333333.......2344555 PP TCP 89 .........kaaksaa.kskksqksaasalnlakesraka 118 + a++ k+ +++++ a++++l k+++a++ 678339919 124 pvshslltpSPAPFILgKRLRQEDDGAHHRELGKDESASS 163 5888888885555555566666666666666666555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-32	36	160	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	37	91	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MLTATSDGPD GGSGTAIPKT SSAGATSTGQ QGKKPSAKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVASSGAR NSSSSMSVSF 120 DHKPVSHSLL TPSPAPFILG KRLRQEDDGA HHRELGKDES ASSSAAISPA VATGGFWALP 180 TRPDFGQVWS FTPHPDIVVA ASPNSSSPQH HHQQTHSSAL RFLQQNHQLS EASAARVGNY 240 LPIAQVHGHH LNLLASLSGT PPQSSEQRRE TDAN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678339919

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022868503.1	1e-113	transcription factor TCP7-like
Refseq	XP_022868504.1	1e-113	transcription factor TCP7-like
Swissprot	Q9FMX2	2e-79	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A4D8ZI28	1e-112	A0A4D8ZI28_SALSN; Transcription factor TCP21 (Protein CCA1 HIKING EXPEDITION)
STRING	Solyc04g009180.1.1	1e-84	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-59	TCP family protein