PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678339703
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 309aa    MW: 34703.9 Da    PI: 7.1995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678339703genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+d++++ G g+W++ +++ g+ R++k+c++rw +yl
        678339703 14 KGPWTPEEDEKLLDYINKNGHGSWRSLPKHAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding49.78.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++l v+++  lG++ W++Ia+ ++ gRt++++k+ w+++l
        678339703  67 RGPFSPEEEKLVVQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.103965IPR017930Myb domain
SuperFamilySSF466899.36E-3111108IPR009057Homeodomain-like
SMARTSM007175.5E-151363IPR001005SANT/Myb domain
PfamPF002493.4E-171461IPR001005SANT/Myb domain
CDDcd001671.00E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2565116IPR009057Homeodomain-like
SMARTSM007171.6E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129420.1466116IPR017930Myb domain
PfamPF002491.4E-1467112IPR001005SANT/Myb domain
CDDcd001671.80E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRAPCCDKK GLKKGPWTPE EDEKLLDYIN KNGHGSWRSL PKHAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SPEEEKLVVQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLLMG  120
IDPQTHEQTA VPAVAGTRPR SSPSTRHMAQ WESARLEAEA RLSRESLLFI PTSTEKPQTD  180
YFLRLWNSEV GETFRKCGNQ KTSPSQVSKC GSLSETTTIE AAAAGVVVKD ENFNEGKAKE  240
FSNVYHNEDE SCVSSGLEED SSESTLQLLL DFPSQNDMSF LENNTDCYGF CHGSFFHCSS  300
QETNKSGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678339703
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091956.11e-141myb-related protein Zm38 isoform X2
SwissprotQ9M2D91e-126MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2G9G4X21e-136A0A2G9G4X2_9LAMI; Transcription factor, Myb superfamily
STRINGSolyc01g094360.2.11e-134(Solanum lycopersicum)
STRINGPGSC0003DMT4000000941e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-128myb domain protein 17