PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678339211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | bHLH | ||||||||
Protein Properties | Length: 96aa MW: 10803.2 Da PI: 9.4231 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.1 | 2.4e-06 | 28 | 61 | 22 | 54 |
HHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 22 eLrellPk.askapskKlsKaeiLekAveYIksL 54 +L+ ++P+ + +s K+s a +L+++++YIk+L 678339211 28 RLQCIVPEtHRRRTSDKVSAAKVLQETCDYIKKL 61 7889999977799*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.223 | 6 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-7 | 9 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.49E-7 | 21 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MSSRRNPRSR QPAAPRISDE EILNLVTRLQ CIVPETHRRR TSDKVSAAKV LQETCDYIKK 60 LVREVGDLSE QLSQLLATTD GNSNEAAVIR SLLSRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678339211 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023886648.1 | 1e-31 | transcription factor PRE6-like | ||||
Swissprot | Q9LJX1 | 1e-30 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A0L9TLK3 | 2e-29 | A0A0L9TLK3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R1V6 | 2e-29 | A0A0S3R1V6_PHAAN; Uncharacterized protein | ||||
TrEMBL | B9RUP9 | 2e-29 | B9RUP9_RICCO; Transcription regulator, putative | ||||
STRING | XP_002517494.1 | 3e-30 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA353 | 24 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 5e-33 | bHLH family protein |