PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678339127

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

MYB

Protein Properties

Length: 197aa MW: 23028.5 Da PI: 11.7706

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678339127	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	42	87	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W +eEd +l+++v ++G+ +W++Ia+t+ gR++k+c++rw++ 678339127 42 RGHWKAEEDGKLKELVSLHGPQNWNAIAQTLL-GRSGKSCRLRWFNQ 87 899**************************9.*********996 PP
2	Myb_DNA-binding	52.9	8.6e-17	94	137	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eE+++lv a++ +G++ W+tIa+++ gRt++++k++w+ 678339127 94 RRAFTQEEEDRLVAAHRAYGNK-WATIAARLFPGRTDNSLKNHWH 137 678*****************.988877*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.293	37	92	IPR017930	Myb domain
SMART	SM00717	1.0E-11	41	90	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.13E-27	41	136	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-15	42	87	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-24	43	95	IPR009057	Homeodomain-like
CDD	cd00167	1.27E-10	45	86	No hit	No description
SMART	SM00717	1.6E-12	93	142	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.617	94	144	IPR017930	Myb domain
Pfam	PF00249	3.6E-13	94	137	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-19	96	144	IPR009057	Homeodomain-like
CDD	cd00167	4.46E-9	96	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MMAWFVHGFD ANWDNFWFSP VFFPVNRIRA PMQQQMLKVK ARGHWKAEED GKLKELVSLH 60 GPQNWNAIAQ TLLGRSGKSC RLRWFNQLDP RIDRRAFTQE EEDRLVAAHR AYGNKWATIA 120 ARLFPGRTDN SLKNHWHVIT ARRLRQQHSR TRKPRSKITP QKRPFLPSQS HCFSSQASGC 180 KTVSLLTKLR AALHTLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-28	41	144	6	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678339127

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021619781.1	9e-58	transcription factor MYB56
Refseq	XP_022774042.1	2e-57	transcription factor CSA-like
Swissprot	Q9SEZ4	2e-57	MY105_ARATH; Transcription factor MYB105
TrEMBL	A0A178WFH2	5e-56	A0A178WFH2_ARATH; MYB105
TrEMBL	A0A2C9VGI0	6e-56	A0A2C9VGI0_MANES; Uncharacterized protein
TrEMBL	A0A4D8ZQ16	2e-56	A0A4D8ZQ16_SALSN; Myb proto-oncogene protein, plant
TrEMBL	M0T2A0	3e-56	M0T2A0_MUSAM; Uncharacterized protein
STRING	Cagra.0820s0004.1.p	5e-57	(Capsella grandiflora)
STRING	cassava4.1_009525m	1e-56	(Manihot esculenta)
STRING	GSMUA_Achr5P27750_001	5e-57	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1784	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	8e-60	myb domain protein 105

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]