PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678338694
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 326aa    MW: 36008.8 Da    PI: 4.6197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678338694genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19125175155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  678338694 125 KKFRGVRQRP-WGKWAAEIRDPQ----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 175
                59********.**********93....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.84E-32125182No hitNo description
PfamPF008479.6E-13126175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-30126183IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21126183IPR016177DNA-binding domain
PROSITE profilePS5103223.828126183IPR001471AP2/ERF domain
SMARTSM003803.3E-38126189IPR001471AP2/ERF domain
PRINTSPR003673.4E-10127138IPR001471AP2/ERF domain
PRINTSPR003673.4E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MMVFCEGEPK ISEYVSGTTV VTGLQLPECQ GNSNFSGGVV GVRTVRFCVT DPDATDSSSD  60
EEDRLELLVK RRRVRRYVNE VKIRSEDGSL SGCSDGAVKS CRQAVTVQKR KKSVGVVQES  120
NFRNKKFRGV RQRPWGKWAA EIRDPQRRVR LWLGTYDTAE EAAMVYDHAA IQLRGPDALT  180
NFSNPQPETR KNAGYNSGEE SQTNAKSPSS VLRFVSPEPE PPSTQAHHHL PSPSNDSPAI  240
SLTESFSNFS IFPPIDDLFP DVDNPALLPD FFDQTGFSDE LLPLDISNDA LFTSSNSDSG  300
SAALLWPSDD FFQDFNDVFG SDPLSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20125182159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20123182262ATERF1
3gcc_A3e-20123182262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678338694
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080873.12e-97ethylene-responsive transcription factor CRF2
TrEMBLS8E6386e-96S8E638_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.A00686.1.p1e-80(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-45cytokinin response factor 2