PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678338670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SRS | ||||||||
Protein Properties | Length: 94aa MW: 9922.88 Da PI: 6.04 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 38.1 | 5e-12 | 3 | 28 | 128 | 153 |
DUF702 128 eelaYqtavsigGhvfkGiLydqGle 153 +++aYqt+v+i+Gh+f GiLydqG+ 678338670 3 DQYAYQTSVNISGHMFTGILYDQGPP 28 89**********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.2E-9 | 3 | 27 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.2E-12 | 3 | 27 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MVDQYAYQTS VNISGHMFTG ILYDQGPPEP DGPANFLTGG SSFSAPAAGL LQQPLFHSRT 60 SASGTGTTSP HYPSPSPFSA FTCISSQLFH NQNP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678338670 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092834.1 | 1e-15 | protein SHI RELATED SEQUENCE 3-like | ||||
TrEMBL | A0A4D8YQ67 | 5e-26 | A0A4D8YQ67_SALSN; Uncharacterized protein | ||||
STRING | Migut.B00196.1.p | 1e-12 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36260.1 | 4e-09 | Lateral root primordium (LRP) protein-related |