PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678337903
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 349aa    MW: 40626.7 Da    PI: 6.9634
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678337903genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.4e-19152198148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll+++v+++G + W++Ia++++ gR +kqc++rw+++l
        678337903 152 KGQWTREEDGLLIELVEKHGVRKWSAIAQMLP-GRIGKQCRERWHNHL 198
                      799*****************************.*************97 PP
2Myb_DNA-binding53.74.9e-17204246145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++rW++eEd +l++a+++ G++ W+ Iar ++ gR+++ +k++w+
        678337903 204 KDRWSEEEDMILIEAHRRVGNK-WAEIARSLP-GRSENTIKNHWN 246
                      68********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.442147202IPR017930Myb domain
SuperFamilySSF466892.83E-31150245IPR009057Homeodomain-like
SMARTSM007171.8E-17151200IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-29153205IPR009057Homeodomain-like
PfamPF139212.9E-18155212No hitNo description
CDDcd001672.24E-15155198No hitNo description
PROSITE profilePS5129420.231203253IPR017930Myb domain
SMARTSM007171.1E-15203251IPR001005SANT/Myb domain
CDDcd001671.90E-11206249No hitNo description
Gene3DG3DSA:1.10.10.603.8E-21206253IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEFDAFDHHH QELFQQHVPH TEDYDLICCS PHALDLDHDH HFMVDGGASS TAAGSMFYSS  60
FFNPFQACFE KVPSPADAHL IHQLHDIDHH QLQHPASGVF VDPYHHCYPE ADLVDEDWVK  120
KPDPTMKNET RNKNRLEPKR KRIVHKRKEI IKGQWTREED GLLIELVEKH GVRKWSAIAQ  180
MLPGRIGKQC RERWHNHLKP DIKKDRWSEE EDMILIEAHR RVGNKWAEIA RSLPGRSENT  240
IKNHWNATKR RQLSLSCRKS TTSKSVTPLQ NYIRSLLLLS KDKDADKGSR SYMQNSTPTS  300
QSNNSKNVDA GKLETEEAFH MMDEQMELDL QKEMDFMQML SSYGGYINV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-451492531105MYB PROTO-ONCOGENE PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678337903
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850795.11e-82PREDICTED: myb-like protein AA
TrEMBLA0A2G9HWG54e-90A0A2G9HWG5_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.H00097.1.p4e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-58myb domain protein 98