PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678337891
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 358aa    MW: 40323.1 Da    PI: 7.5527
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678337891genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-1857104148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
        678337891  57 RGPWTPEEDAKILAYVASHGVGNWTLVPQKAGLNRCGKSCRLRWTNYL 104
                      89********************************************97 PP
2Myb_DNA-binding50.16.3e-16113153446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T+eE+e ++++++  G++ W++Ia+ ++ gRt++++k++w++
        678337891 113 FTPEEEECIIELHRTIGSR-WSLIAKQLP-GRTDNDVKNYWNT 153
                      9******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2448107IPR009057Homeodomain-like
PROSITE profilePS5129427.59852108IPR017930Myb domain
SuperFamilySSF466893.07E-3154151IPR009057Homeodomain-like
SMARTSM007178.6E-1656106IPR001005SANT/Myb domain
PfamPF002494.2E-1757104IPR001005SANT/Myb domain
CDDcd001673.89E-1259104No hitNo description
Gene3DG3DSA:1.10.10.608.8E-25108160IPR009057Homeodomain-like
PROSITE profilePS5129418.934109159IPR017930Myb domain
SMARTSM007171.4E-14109157IPR001005SANT/Myb domain
CDDcd001671.79E-11113153No hitNo description
PfamPF002491.0E-14113153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MHFMLPHLLN VSLPLELLKK KQQQTIPPSF RFAILHFVAH SPSMGRPPCC DKSNVKRGPW  60
TPEEDAKILA YVASHGVGNW TLVPQKAGLN RCGKSCRLRW TNYLRPDLKH DGFTPEEEEC  120
IIELHRTIGS RWSLIAKQLP GRTDNDVKNY WNTKLKKKLK KMGIDPVTHK PFSQLFSEYG  180
KIAAVNAKFS GNEGFWKHEN SPPVIPEQYS CSDLLTPVEE TMFQLRHPHD FNEASSSVAF  240
SPLNGIMQFE CMPPDLCDPS HVPMVPSCNP LCASGTAVLH SDSRDQMPVC KSLDTLRSLS  300
MQRESSVSWQ GNLREKWPAD SAAASSSSTP DSFVEAILAH DIEMKLHIPT ILSENYDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30571597108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153160KLKKKLKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678337891
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098554.11e-123transcription factor MYB35 isoform X2
TrEMBLA0A2G9GJH11e-109A0A2G9GJH1_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.H00878.1.p1e-108(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.14e-77MYB family protein