PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678337749
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 307aa    MW: 34430.4 Da    PI: 9.0345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678337749genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-1767112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia++++ gR++k+c++rw++ 
        678337749  67 RGHWKPTEDSKLRELVALYGPQNWNLIAEKLQ-GRSGKSCRLRWYNQ 112
                      899*****************************.************96 PP
2Myb_DNA-binding51.52.3e-16119163147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++++eE+ +l +a++ +G++ W++I+r ++ gRt++ +k++w+ +
        678337749 119 RTAFSEEEEVRLMEAHRVYGNK-WALISRFFP-GRTDNAVKNHWHVL 163
                      678*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9762117IPR017930Myb domain
SMARTSM007176.6E-1566115IPR001005SANT/Myb domain
PfamPF002497.2E-1767113IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-2867160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-2568120IPR009057Homeodomain-like
CDDcd001673.53E-1370111No hitNo description
SMARTSM007177.1E-14118166IPR001005SANT/Myb domain
PROSITE profilePS5129419.999118168IPR017930Myb domain
PfamPF002495.9E-14119163IPR001005SANT/Myb domain
CDDcd001673.18E-10121164No hitNo description
Gene3DG3DSA:1.10.10.603.2E-19121167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAETSNHMAM GFSLVRGCIM LSSSQQPRPD DVSCEDDAKS PPQSPSSQQH RRESTAMAMA  60
SAKFCSRGHW KPTEDSKLRE LVALYGPQNW NLIAEKLQGR SGKSCRLRWY NQLDPRINRT  120
AFSEEEEVRL MEAHRVYGNK WALISRFFPG RTDNAVKNHW HVLMARRFRE KSKANYARRR  180
CWSDPHSRPS DQPGTRSEPS RNSLTNQTTI TTMAAAANPY FNDHQWNRTP ALAPPPFAFD  240
GFVLGRHGSW GSRTHCSRIQ AAAPRGGTYL SAAASLSSEA AADDRDEDDE AAGLAPQFID  300
FLGVGEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-33671687108B-MYB
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678337749
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024197655.14e-73transcription factor MYB54-like
SwissprotQ9SEZ45e-66MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2P6R2T69e-72A0A2P6R2T6_ROSCH; Putative transcription factor MYB-HB-like family
STRINGGLYMA01G05980.24e-68(Glycine max)
STRINGcassava4.1_028014m3e-68(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-67myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]