PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336918
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 322aa    MW: 35761.1 Da    PI: 7.2675
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336918genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.91.5e-121942361456
                HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 L ++F + +  +++++  LA++l+L  rqV vWFqNrRa+ k
  678336918 194 FLSRVFIQPPFFQQKQKLALAAHLNLRPRQVEVWFQNRRARTK 236
                589999999********************************98 PP
2HD-ZIP_I/II93.13.1e-301912721092
  HD-ZIP_I/II  10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  q  +L + F +    ++++K +la +L+l+prqv+vWFqnrRARtk++q+E+d+e+Lkr++dal+een+rL+kev+eLr +lk
    678336918 191 QQIFLSRVFIQPPFFQQKQKLALAAHLNLRPRQVEVWFQNRRARTKLRQTEVDCEYLKRCFDALTEENRRLQKEVQELR-ALK 272
                  5567888898888999**************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-15144236IPR009057Homeodomain-like
PROSITE profilePS5007113.345154238IPR001356Homeobox domain
SMARTSM003894.4E-8156242IPR001356Homeobox domain
CDDcd000869.08E-10158239No hitNo description
SuperFamilySSF466892.65E-12191247IPR009057Homeodomain-like
PfamPF000463.0E-10194236IPR001356Homeobox domain
PROSITE patternPS000270213236IPR017970Homeobox, conserved site
SMARTSM003406.0E-24238281IPR003106Leucine zipper, homeobox-associated
PfamPF021837.7E-12239272IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MELDLTLGGD CSRVQLGSLQ DRPITQASSA FDPCMDLGHR FERAGESLVD EDDPALEGDG  60
EAPVLQLGLL PRRSSPRREN GNRINQICPP NSFLYCMCSL EKAGAFEGSW EYGSSGNKNP  120
ATAVAVEDAS SANRSGGGGS TAVEGERGSD DDENANARKK LRLSKEQSAY LEESFKEHST  180
LNPVSSCKFP QQIFLSRVFI QPPFFQQKQK LALAAHLNLR PRQVEVWFQN RRARTKLRQT  240
EVDCEYLKRC FDALTEENRR LQKEVQELRA LKRAAPFYMQ APATTLTMCP SCERVAPSSS  300
AAERDSRPRF FPAAPRNHAA AT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678336918
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281735.12e-71LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX11
SwissprotP466654e-65HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2G9I6098e-73A0A2G9I609_9LAMI; Transcription factor HEX
STRINGEOY095244e-70(Theobroma cacao)
STRINGXP_008392143.19e-71(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-65homeobox from Arabidopsis thaliana