PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678336702

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Protein Properties

Length: 103aa MW: 12061.9 Da PI: 9.304

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678336702	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.6	9.1e-13	21	79	42	99
TS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 42 sgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 ++++W++ + r++ ++ + ++GW++Fv +n+L+ gD +vF+l+ + + e++v+++r+ 678336702 21 KNKTWDLFY--RGHYSTpRFEGSGWRSFVADNRLRIGDACVFELMtCNeTLLEFKVQILRH 79 679999999..77666656788*********************886666777888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.378	1	80	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.6E-11	18	79	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-11	19	79	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.9E-9	21	78	IPR003340	B3 DNA binding domain
CDD	cd10017	1.87E-11	23	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MPKKMRWRLP RAPMRSVIRC KNKTWDLFYR GHYSTPRFEG SGWRSFVADN RLRIGDACVF 60 ELMTCNETLL EFKVQILRHD LPPELAAYLS NTGESEENPI GIT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678336702

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1819	21	54