PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678336538 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 33499.9 Da PI: 7.9456 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 11 | 56 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde+l++ vk++G+++W++I ++ + R +k+c++rw + 678336538 11 KGPWKPEEDEILINHVKKYGPRDWSSIRSKGLLMRNGKSCRLRWVN 56 79*************************888779***********87 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.2e-12 | 67 | 106 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +++ eE++ +++ +qlG++ W++Ia ++ gR+++++k++w 678336538 67 KFSLEEEKTVINLQAQLGNK-WARIATYLT-GRSDNDVKNFW 106 79******************.********9.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 5 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.554 | 6 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.48E-26 | 8 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-11 | 10 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-12 | 13 | 58 | No hit | No description |
Pfam | PF13921 | 3.8E-13 | 14 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-15 | 60 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.363 | 63 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-9 | 64 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-8 | 67 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MVKYDGEDVK KGPWKPEEDE ILINHVKKYG PRDWSSIRSK GLLMRNGKSC RLRWVNKLRP 60 DLKNGVKFSL EEEKTVINLQ AQLGNKWARI ATYLTGRSDN DVKNFWSGRQ KRMARIRNAP 120 IESARIMTDV KAPAFHNPPS TEAVDINSSG FERYMTNSLS SSSLRFELLP LPELMHPVGS 180 IYGTSDFQSN LSSIQKQPYS EQQSPNLPFP QPQSDFPCTR REGPCFVDVF ENFSQPPPPI 240 CHQGVGQTPL GVYDKSYLSG VTNILATDNY FMNDFQPIEM FDEIEPFPSP SNWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 8 | 112 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678336538 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019161076.1 | 1e-82 | PREDICTED: transcription factor MYB29-like | ||||
TrEMBL | A0A2Z7BAP7 | 2e-87 | A0A2Z7BAP7_9LAMI; Uncharacterized protein | ||||
STRING | Solyc01g090530.1.1 | 1e-74 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4207 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 9e-64 | MYB family protein |