PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336538
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 294aa    MW: 33499.9 Da    PI: 7.9456
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336538genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-131156146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde+l++ vk++G+++W++I ++  + R +k+c++rw +
        678336538 11 KGPWKPEEDEILINHVKKYGPRDWSSIRSKGLLMRNGKSCRLRWVN 56
                     79*************************888779***********87 PP

2Myb_DNA-binding38.82.2e-1267106344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++ eE++  +++ +qlG++ W++Ia ++  gR+++++k++w
        678336538  67 KFSLEEEKTVINLQAQLGNK-WARIATYLT-GRSDNDVKNFW 106
                      79******************.********9.*********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-21559IPR009057Homeodomain-like
PROSITE profilePS5129421.554662IPR017930Myb domain
SuperFamilySSF466891.48E-268106IPR009057Homeodomain-like
SMARTSM007173.5E-111060IPR001005SANT/Myb domain
CDDcd001671.53E-121358No hitNo description
PfamPF139213.8E-131475No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1560112IPR009057Homeodomain-like
PROSITE profilePS5129413.36363114IPR017930Myb domain
SMARTSM007172.2E-964112IPR001005SANT/Myb domain
CDDcd001671.47E-867106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVKYDGEDVK KGPWKPEEDE ILINHVKKYG PRDWSSIRSK GLLMRNGKSC RLRWVNKLRP  60
DLKNGVKFSL EEEKTVINLQ AQLGNKWARI ATYLTGRSDN DVKNFWSGRQ KRMARIRNAP  120
IESARIMTDV KAPAFHNPPS TEAVDINSSG FERYMTNSLS SSSLRFELLP LPELMHPVGS  180
IYGTSDFQSN LSSIQKQPYS EQQSPNLPFP QPQSDFPCTR REGPCFVDVF ENFSQPPPPI  240
CHQGVGQTPL GVYDKSYLSG VTNILATDNY FMNDFQPIEM FDEIEPFPSP SNWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-24811224126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678336538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161076.11e-82PREDICTED: transcription factor MYB29-like
TrEMBLA0A2Z7BAP72e-87A0A2Z7BAP7_9LAMI; Uncharacterized protein
STRINGSolyc01g090530.1.11e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.19e-64MYB family protein