PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678336424 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 28307.8 Da PI: 4.7222 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.4 | 6.9e-54 | 6 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePw+L + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+ 678336424 6 LPPGFRFHPTDEELVNYYLKRKIHGLEIEL-DIIPEVDLYKCEPWELVGdpkclvveksFLPSKDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDR 104 79****************************.99**************6345677665543344778********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++++g+kktLv+y+grap+g +tdWvmheyrl 678336424 105 KVTS-QRRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 141 ****.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-61 | 4 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58 | 6 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-30 | 7 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSPVGLPPGF RFHPTDEELV NYYLKRKIHG LEIELDIIPE VDLYKCEPWE LVGDPKCLVV 60 EKSFLPSKDP EWYFFGPRDR KYPNGFRTNR ATRAGYWKST GKDRKVTSQR RAIGMKKTLV 120 YYRGRAPQGI RTDWVMHEYR LDDKGSDEAS GIQESYALCR VLKKNWLSTE VEGQGQSSNL 180 LLLDLTPTES ETLSPELPMA SSSSNIGNME EEDGNGKEDD EDESWMQFIR DGVCCGDELS 240 QMVFTNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 1 | 165 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 1 | 165 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 1 | 165 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 1 | 165 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 1 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 1 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 1 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 1 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 1 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 1 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 1 | 165 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 1 | 165 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-51 | 1 | 165 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 1 | 165 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678336424 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072043.2 | 1e-127 | NAC domain-containing protein 86 isoform X2 | ||||
Swissprot | A4VCM0 | 1e-82 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | A0A068TRH5 | 1e-121 | A0A068TRH5_COFCA; Uncharacterized protein | ||||
STRING | EOY19688 | 1e-118 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4621 | 24 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-106 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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