PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678336203

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Nin-like

Protein Properties

Length: 355aa MW: 40563.9 Da PI: 6.2546

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678336203	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.2	1.8e-24	263	313	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++++dl+ yF+lp+++AA+++++c+Tv+K+iCR+ G+ RWPhRkiks+ 678336203 263 TRSLKMKDLRDYFDLPMEEAARKMNLCPTVIKKICRKSGVGRWPHRKIKSI 313 67899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	253	334	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-21	266	313	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDAEYAKYFQ ELLPPPQDIS FSSMFVDENP TLGLCELPLN QNQASLDATI HRNADAKGLS 60 HDSSFVTTFF NDTDEVIDLP TAAVPSFPFG ESSSCQNPAD TLPNFGFVVP ESQVSCICCQ 120 TLREITHFNG LEIQRLEIHG RLGTITHAVL SKHDLDSSLP TQHNQFIDFS MEGPKKVKKF 180 LLQYFKTCEE DGYFPLEDPL LPFYDALSVG LSVSRVSDDF NPSSPDNTDD SLKRRKEELK 240 PLDGESSAEC KKKISLSKQR ERTRSLKMKD LRDYFDLPME EAARKMNLCP TVIKKICRKS 300 GVGRWPHRKI KSIDGKISRK LKKLESKDED ERERARADIK KHQQELERIY QEYCR

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDAEYAKYFQ ELLPPPQDIS FSSMFVDENP TLGLCELPLN QNQASLDATI HRNADAKGLS  60
HDSSFVTTFF NDTDEVIDLP TAAVPSFPFG ESSSCQNPAD TLPNFGFVVP ESQVSCICCQ  120
TLREITHFNG LEIQRLEIHG RLGTITHAVL SKHDLDSSLP TQHNQFIDFS MEGPKKVKKF  180
LLQYFKTCEE DGYFPLEDPL LPFYDALSVG LSVSRVSDDF NPSSPDNTDD SLKRRKEELK  240
PLDGESSAEC KKKISLSKQR ERTRSLKMKD LRDYFDLPME EAARKMNLCP TVIKKICRKS  300
GVGRWPHRKI KSIDGKISRK LKKLESKDED ERERARADIK KHQQELERIY QEYCR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678336203

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Migut.B01423.1.p	2e-72	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-12	RWP-RK domain-containing protein