PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336148
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 312aa    MW: 35406.5 Da    PI: 8.5837
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336148genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141964146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEd++l++ vk+ G+++W++I ++  ++Rt+k+c++rw +
        678336148 19 KGPWKPEEDQILINHVKKNGPRDWSSIRSKGLLNRTGKSCRLRWVN 64
                     79*************************888779***********87 PP

2Myb_DNA-binding39.41.4e-1285124344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++ E+ + +d+ +q+G++ W++Ia ++  gRt++++k++w
        678336148  85 KFSPSEERIVLDLQAQFGNK-WAKIATYLT-GRTDNDVKNFW 124
                      79******************.********9.*********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.9641470IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-211574IPR009057Homeodomain-like
SuperFamilySSF466891.13E-2617124IPR009057Homeodomain-like
SMARTSM007177.5E-131868IPR001005SANT/Myb domain
PfamPF002494.1E-131964IPR001005SANT/Myb domain
CDDcd001672.01E-122166No hitNo description
SMARTSM007171.4E-1082130IPR001005SANT/Myb domain
PROSITE profilePS5129414.53683132IPR017930Myb domain
PfamPF002496.7E-1185124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-1585126IPR009057Homeodomain-like
CDDcd001671.87E-985124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MERGKRKMVK YGEMEEVKKG PWKPEEDQIL INHVKKNGPR DWSSIRSKGL LNRTGKSCRL  60
RWVNKLRPNL KKYEVKIVLF TCGVKFSPSE ERIVLDLQAQ FGNKWAKIAT YLTGRTDNDV  120
KNFWSSRQKR LSRLQGASLM RPNKASSSIH EVKAPAFPVA PCAQAMSLNS SESGTLEDAP  180
LSGLVRPISC FCGNTAFHFD FFDEKKMFSE SQAGLPFPSS FHVQQDFLGS QDVTTRLGDP  240
CFMDVFNHLV EPTSGVHIPF GQPLYDINMN TRANEVKIES FDLVSIDSFI DDFPPMDMFD  300
EIEPLPSPSK WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251613024126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678336148
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093325.17e-93transcription factor MYB63-like
TrEMBLA0A2Z7BAP73e-89A0A2Z7BAP7_9LAMI; Uncharacterized protein
STRINGSolyc01g090530.1.13e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.16e-61MYB family protein