PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678336148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 35406.5 Da PI: 8.5837 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 19 | 64 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd++l++ vk+ G+++W++I ++ ++Rt+k+c++rw + 678336148 19 KGPWKPEEDQILINHVKKNGPRDWSSIRSKGLLNRTGKSCRLRWVN 64 79*************************888779***********87 PP | |||||||
2 | Myb_DNA-binding | 39.4 | 1.4e-12 | 85 | 124 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++ E+ + +d+ +q+G++ W++Ia ++ gRt++++k++w 678336148 85 KFSPSEERIVLDLQAQFGNK-WAKIATYLT-GRTDNDVKNFW 124 79******************.********9.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.964 | 14 | 70 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 15 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-26 | 17 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-13 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-13 | 19 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-12 | 21 | 66 | No hit | No description |
SMART | SM00717 | 1.4E-10 | 82 | 130 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.536 | 83 | 132 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.7E-11 | 85 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-15 | 85 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.87E-9 | 85 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MERGKRKMVK YGEMEEVKKG PWKPEEDQIL INHVKKNGPR DWSSIRSKGL LNRTGKSCRL 60 RWVNKLRPNL KKYEVKIVLF TCGVKFSPSE ERIVLDLQAQ FGNKWAKIAT YLTGRTDNDV 120 KNFWSSRQKR LSRLQGASLM RPNKASSSIH EVKAPAFPVA PCAQAMSLNS SESGTLEDAP 180 LSGLVRPISC FCGNTAFHFD FFDEKKMFSE SQAGLPFPSS FHVQQDFLGS QDVTTRLGDP 240 CFMDVFNHLV EPTSGVHIPF GQPLYDINMN TRANEVKIES FDLVSIDSFI DDFPPMDMFD 300 EIEPLPSPSK WS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 16 | 130 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678336148 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093325.1 | 7e-93 | transcription factor MYB63-like | ||||
TrEMBL | A0A2Z7BAP7 | 3e-89 | A0A2Z7BAP7_9LAMI; Uncharacterized protein | ||||
STRING | Solyc01g090530.1.1 | 3e-75 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4207 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 6e-61 | MYB family protein |