PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678336066

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TCP

Protein Properties

Length: 350aa MW: 36740.6 Da PI: 10.3713

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678336066	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.4e-38	69	198	3	112
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg....... 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+qa+pai+++tgt++ +a ++ +s+ +sg 678336066 69 TKRSSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIRWLLEQAEPAIIAATGTGTVPAIAMsvngtlkV------PTSATNSGagedsgd 162 7999***********************************************************8888844442222221......222222222344445 PP TCP 89 ............kaaksaakskksqksaasalnlak 112 + +++a+++++s+ + ++l+l + 678336066 163 rkrrclsgvefiDMNAAAPPPSNSPVAPGNNLSLVN 198 666777777776333333344444444443444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-31	73	161	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.497	74	128	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
ISVGFLRIFM ASGKDLNTDL GVGTDKNQES YPRPSLMAAL APVLSLKAER RDSGEDDKDT 60 RPLPPPQLTK RSSTKDRHTK VEGRGRRIRM PATCAARVFQ LTRELGHKSD GETIRWLLEQ 120 AEPAIIAATG TGTVPAIAMS VNGTLKVPTS ATNSGAGEDS GDRKRRCLSG VEFIDMNAAA 180 PPPSNSPVAP GNNLSLVNSN NSAITSASAS TVSSPLMPAI PLTAMWAIPS MASNSNSSSP 240 TFLIIPPNQT TQVVTIQPGS AVNVTPVVNI STPGRPISAF VAAMQPVTGG GSGVTLAQPI 300 TQINLQSPQP GSTPCFPSPS NNNSLANRAQ NFRDITLQVQ DKTKLSLHPH

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

ISVGFLRIFM ASGKDLNTDL GVGTDKNQES YPRPSLMAAL APVLSLKAER RDSGEDDKDT  60
RPLPPPQLTK RSSTKDRHTK VEGRGRRIRM PATCAARVFQ LTRELGHKSD GETIRWLLEQ  120
AEPAIIAATG TGTVPAIAMS VNGTLKVPTS ATNSGAGEDS GDRKRRCLSG VEFIDMNAAA  180
PPPSNSPVAP GNNLSLVNSN NSAITSASAS TVSSPLMPAI PLTAMWAIPS MASNSNSSSP  240
TFLIIPPNQT TQVVTIQPGS AVNVTPVVNI STPGRPISAF VAAMQPVTGG GSGVTLAQPI  300
TQINLQSPQP GSTPCFPSPS NNNSLANRAQ NFRDITLQVQ DKTKLSLHPH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678336066

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091297.1	1e-116	transcription factor TCP9
Swissprot	O64647	5e-55	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A2G9HFB0	1e-124	A0A2G9HFB0_9LAMI; Uncharacterized protein
STRING	Migut.B01672.1.p	3e-88	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-53	TCP family protein