PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 836aa    MW: 90834.5 Da    PI: 6.0214
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336030genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.21.7e-974778351374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                +v++L+++Ae  +sg+l la+ +Larl+++ sp+g+p+qR+a+y +eAL+  l+ +++++ +  ++  +s+ + + ++aa+k f e+sP+ +f ++t+Nq
  678336030 477 MVDQLYKAAELAQSGNLVLADGILARLNHQLSPNGKPFQRAAFYCKEALQLLLHCTSNNMDD-PSSACSSPISFIYKIAAYKSFLEISPLGQFVNFTCNQ 575
                5789*************************************************995555554.4555555577999************************ PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                a+lea+eg +r+Hi+Dfdi++G+ W++Llq+La R++gppsl+iT+++sp+++++ el  t+e L +fA+e++v++ef+v+   +++ l+  +  + ++E
  678336030 576 ALLEALEGFDRIHIVDFDIGYGGLWASLLQELAVRSGGPPSLKITAMASPSAHNQLELGLTRESLIQFANEINVSLEFEVM---SVDLLSSGSWLLPENE 672
                ********************************************************************************6...67777777777899** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                a+aVnl +   +l d + s++     vL++vk+l Pk+v  v+  + +++ sF++++++al+ ys l++sl+a   +++++ +k+E++ll++ i+ + + 
  678336030 673 AVAVNLPV--GSLADYQFSMPL----VLRFVKQLAPKIVLSVDGGCYRTDLSFANHVIHALQSYSNLLESLDAA-NAHTDALQKIEKFLLQPGIERIMTG 765
                ******99..556655677776....*********************************************887.5677999**************9987 PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                + ++     e+ ++Wr++  +aGF+pv++s+ a++qa++++++++++g+++e+++ sl+l+W++++L+s+SaW+
  678336030 766 RFRS----PEKTQHWRSMALAAGFSPVAFSNLAESQAECIIKRFPVRGFQIEKRQSSLFLCWQRKELISASAWK 835
                7666....9****************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.079451815IPR005202Transcription factor GRAS
PfamPF035145.8E-95477835IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MLLRSLRPPE RQRISAAPSF QTITKSLLPS STTMSDSSNL CRTPLASYSR NRHFFPITIK  60
LELSPGPRIP PPPTDVIMSV YPGRMKGMPL SFEFEGRGVL DLELIVKNRG FFGDSGVCCV  120
DLAERNCLFS GFGEPTSVLD PVRPTSSSNL SSSLGGAGGV CRAGSADTAG VAAVSEANPN  180
SKWQQDSTTA TSSNVGRIDS GFVPVAPSPE IGPPAGGSSE KFSMEDWESV LSESAAVSPT  240
QEQDILRWIM GDVEEPALGN PNNGDVFPAG ESEFSGGYTA ADQAFGGENP LTTSFISTLP  300
IYPSNSRSSS DKIGMAGNFK CSPNSQSIVH PCNNSGSVPV HHQTSFDYCT DIKPPFFGSS  360
LLANQPSQNP PLFSLSFSEG QQQSMLHLPP PKRHNSGGPE YGHRGISGQT SKGSFVDSRQ  420
REFYMGGQSL DLQQQFLHQF QLLPHYLHQG SIQQEEKPKL GIGDELGSSH QQQQQAMVDQ  480
LYKAAELAQS GNLVLADGIL ARLNHQLSPN GKPFQRAAFY CKEALQLLLH CTSNNMDDPS  540
SACSSPISFI YKIAAYKSFL EISPLGQFVN FTCNQALLEA LEGFDRIHIV DFDIGYGGLW  600
ASLLQELAVR SGGPPSLKIT AMASPSAHNQ LELGLTRESL IQFANEINVS LEFEVMSVDL  660
LSSGSWLLPE NEAVAVNLPV GSLADYQFSM PLVLRFVKQL APKIVLSVDG GCYRTDLSFA  720
NHVIHALQSY SNLLESLDAA NAHTDALQKI EKFLLQPGIE RIMTGRFRSP EKTQHWRSMA  780
LAAGFSPVAF SNLAESQAEC IIKRFPVRGF QIEKRQSSLF LCWQRKELIS ASAWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-3548383425378Protein SCARECROW
5b3h_A3e-3548383424377Protein SCARECROW
5b3h_D3e-3548383424377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678336030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090295.10.0scarecrow-like protein 6
TrEMBLA0A2G9GWL50.0A0A2G9GWL5_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000667990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62532235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-130GRAS family protein