PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678335645 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 25524.8 Da PI: 7.1543 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0017 | 127 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H 678335645 127 YKCEACNKFFRSYQALGGHKASH 149 9***********99999888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 0.0018 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 6 | 29 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-9 | 127 | 151 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.33E-8 | 127 | 190 | No hit | No description |
PROSITE profile | PS50157 | 10.159 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-8 | 168 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 168 | 190 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.12 | 168 | 197 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 170 | 192 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MKKAIHRCRL CFRCFENGRA LGGHMRSHTM KFYGEKREKE SSLEDSFSFS DEVESSSPEV 60 RGSVLPGPEI SPEEQMAHCL IMLSRDKWER GEFEEFDEFE HKFSDSGESS EDSGEDKIGI 120 IHAKGKYKCE ACNKFFRSYQ ALGGHKASHK KIKLAARRIV IPAEERIHQC PFCRRIFPSG 180 QALGGHKRSH FHGGATALGE ALKIDLNLPA PTEDSTVSDG ELVHAIGA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678335645 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843926.1 | 3e-55 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A4D8ZTN0 | 2e-57 | A0A4D8ZTN0_SALSN; Uncharacterized protein | ||||
STRING | Migut.B01588.1.p | 9e-55 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-37 | C2H2-like zinc finger protein |