PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678335284 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 22283.8 Da PI: 5.0574 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.6e-20 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r r++lg+f+ta++Aa a++aa++kl+g 678335284 35 TYKGVRQRT-WGKWVAEIREP---N-RgSRVWLGTFDTAYDAAVAYDAAARKLYG 84 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.58E-18 | 34 | 94 | No hit | No description |
SuperFamily | SSF54171 | 3.86E-21 | 35 | 92 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-36 | 35 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-31 | 35 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 35 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.825 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-10 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-10 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MLNSVEDKRI RKLAQASSRK GCMRGKGGPE NALCTYKGVR QRTWGKWVAE IREPNRGSRV 60 WLGTFDTAYD AAVAYDAAAR KLYGPEAKVN LPELYEDGGA VYVNPDQASV NHGGGGGDSP 120 VFSFSPEEMM SVQDSLSSSS GGGSGEYVNC SGILRSLNMS LPEVDDSYLW AEAAKGTSFG 180 IVHDPGAFAS SLDCFKDNNG VTFPWLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-17 | 36 | 92 | 6 | 63 | ATERF1 |
3gcc_A | 4e-17 | 36 | 92 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678335284 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083628.1 | 2e-90 | dehydration-responsive element-binding protein 2D-like | ||||
Swissprot | Q9LQZ2 | 6e-51 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | S8DPU1 | 4e-82 | S8DPU1_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.C00778.1.p | 3e-67 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-45 | ERF family protein |
Publications ? help Back to Top | |||
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