PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678335009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 407aa MW: 44511 Da PI: 8.0937 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.6 | 7.9e-33 | 151 | 251 | 3 | 119 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...........kaa 91 g kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a+ +i el+ s + + ++ ++++s+++ s+g +a+ 678335009 151 GSKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAESSINELPPMSIIFP-DT---RKQVSDEKGSHGgggdqlgyespEAE 246 68*************************************************************55555.22...12222221111122334444443222 PP TCP 92 ksaakskksqksaasalnlakesrakar 119 +++a r 678335009 247 SAKA-----------------------R 251 2222.......................2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-33 | 151 | 243 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.29 | 152 | 210 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MGKGRTSFLH LFSPLSLHHK SLSSNRLCRC DNCDIGGGSL KTQQVVEPQL RVSSSETSRC 60 KKLLTRGSVV LTLLNDVFLL VIRNNGAGVL KVGVFEAGVM HQTTLDQYHN EEGGGNERGA 120 DKGGGEDFTA AMGRFYGCPS SRIVRVSRAC GSKDRHSKVL TSKGLRDRRV RLSVNTAIQF 180 YDLQDRLGYD QPSKAVEWLL KAAESSINEL PPMSIIFPDT RKQVSDEKGS HGGGGDQLGY 240 ESPEAESAKA REGAAERKED SFLKTPLNPI SQTTSFTELL NAGIPTRNGG SGATNDSCFI 300 MKSPKQWPSP TPMEYYSSGL LSQATAHAGQ IPLTANHFPG FAVPAAAEHH QSELRQFSFS 360 PDNLGDPSVQ FFFFTVTFTP HAEVSRWISA ELLYPHQRPE PPVVNWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-24 | 157 | 211 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 9e-24 | 157 | 211 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678335009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096599.1 | 2e-77 | transcription factor TCP2-like | ||||
Refseq | XP_011096600.1 | 2e-77 | transcription factor TCP2-like | ||||
Refseq | XP_020554008.1 | 2e-77 | transcription factor TCP2-like | ||||
TrEMBL | A0A4D9B5Y7 | 7e-71 | A0A4D9B5Y7_SALSN; Uncharacterized protein | ||||
STRING | Migut.M00891.1.p | 3e-71 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 5e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |