PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678335009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 407aa    MW: 44511 Da    PI: 8.0937
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678335009genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.67.9e-331512513119
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...........kaa 91 
                g kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a+ +i el+  s + + ++   ++++s+++ s+g           +a+
  678335009 151 GSKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAESSINELPPMSIIFP-DT---RKQVSDEKGSHGgggdqlgyespEAE 246
                68*************************************************************55555.22...12222221111122334444443222 PP

        TCP  92 ksaakskksqksaasalnlakesrakar 119
                +++a                       r
  678335009 247 SAKA-----------------------R 251
                2222.......................2 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-33151243IPR005333Transcription factor, TCP
PROSITE profilePS5136932.29152210IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGKGRTSFLH LFSPLSLHHK SLSSNRLCRC DNCDIGGGSL KTQQVVEPQL RVSSSETSRC  60
KKLLTRGSVV LTLLNDVFLL VIRNNGAGVL KVGVFEAGVM HQTTLDQYHN EEGGGNERGA  120
DKGGGEDFTA AMGRFYGCPS SRIVRVSRAC GSKDRHSKVL TSKGLRDRRV RLSVNTAIQF  180
YDLQDRLGYD QPSKAVEWLL KAAESSINEL PPMSIIFPDT RKQVSDEKGS HGGGGDQLGY  240
ESPEAESAKA REGAAERKED SFLKTPLNPI SQTTSFTELL NAGIPTRNGG SGATNDSCFI  300
MKSPKQWPSP TPMEYYSSGL LSQATAHAGQ IPLTANHFPG FAVPAAAEHH QSELRQFSFS  360
PDNLGDPSVQ FFFFTVTFTP HAEVSRWISA ELLYPHQRPE PPVVNWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-24157211155Putative transcription factor PCF6
5zkt_B9e-24157211155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678335009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096599.12e-77transcription factor TCP2-like
RefseqXP_011096600.12e-77transcription factor TCP2-like
RefseqXP_020554008.12e-77transcription factor TCP2-like
TrEMBLA0A4D9B5Y77e-71A0A4D9B5Y7_SALSN; Uncharacterized protein
STRINGMigut.M00891.1.p3e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2