PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678334936
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 841aa    MW: 91967.4 Da    PI: 9.0528
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678334936genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.5e-192381357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  678334936 23 KYVRYTPEQVEALERVYAECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
               6789*****************************************************97 PP
2START147.81e-461543622205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++++ a+ra+g+v  ++   v ++l+d++ W  +++  +++ +i++g  g+l+l +++ +
  678334936 154 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNSKSVAARACGLVSLEPR-KVTDILKDRLSWFVDCRCHDVTSTINTGngGTLELVYMQVY 252
                68999*****************************************************.9999999999******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf+++Ry+ +l +g+ v++++S++s +  p+   ++ +vRae+lpSg+l++p+++g+s +++v+h+d + ++++++lr+l++s+ + ++k+
  678334936 253 APTTLASaRDFWTLRYTTSLDDGSVVVCERSLTSSTGGPSgpsNPCFVRAEMLPSGFLVRPCEGGGSIIHIVDHIDFDVSIVPEVLRPLYSSSKILAQKM 352
                *************************************999998999****************************************************** PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                ++a+l++ ++
  678334936 353 TMAALRHVRQ 362
                *****98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6611882IPR001356Homeobox domain
SMARTSM003893.4E-162086IPR001356Homeobox domain
SuperFamilySSF466891.41E-162384IPR009057Homeodomain-like
CDDcd000866.12E-172383No hitNo description
PfamPF000462.1E-162381IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-182581IPR009057Homeodomain-like
CDDcd146866.95E-675114No hitNo description
PROSITE profilePS5084822.79144372IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-18152355IPR023393START-like domain
SMARTSM002341.2E-40153363IPR002913START domain
PfamPF018526.8E-44154362IPR002913START domain
SuperFamilySSF559611.92E-34154365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MALSMHRESI NVSSKHQAAM DSKYVRYTPE QVEALERVYA ECPKPSSMRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKESSRLQS VNRKLTAMNK LLMDENDRLQ KQVSTATTDT  120
SSDSAVMSGH PQQQNPTHQH PQRDSNTPAG LLAIAEETLA EFLGKATGTA VDWVQMIGMK  180
PGPDSIGIVA VSRNSKSVAA RACGLVSLEP RKVTDILKDR LSWFVDCRCH DVTSTINTGN  240
GGTLELVYMQ VYAPTTLASA RDFWTLRYTT SLDDGSVVVC ERSLTSSTGG PSGPSNPCFV  300
RAEMLPSGFL VRPCEGGGSI IHIVDHIDFD VSIVPEVLRP LYSSSKILAQ KMTMAALRHV  360
RQIAQETNSE NPRNGGHQPA VLRALIHKLC KGFNDAVSGF ASDGWSTTSS DGMEDITIAV  420
NNSPSKFVSS HYSNMSMVPV GGVICSRASM LLQNVSPALL VRFLREHRSE WADYGIDMYC  480
AASLKHSPHA IPCLKNGSFP SSQVILPLSQ TIENDEFLDV VRLAAHACSP EDIAMSRDMY  540
LLQNDPAATR TLDLASALEV GQGAQHPTGQ ADAGSLNLRS VLTIAFQFTF ENQYRDNVAA  600
MARQYDPHWY RAYTRLRITP GWRWCTEAGF CCLHVCEPGR SGHAGDHTAG ASGHHSGEGP  660
GRKWQEGSGG RILQDHATGQ VVYLHFRQIQ TPPDPPSPLL PHSTGLRISA RWSMRVELGA  720
AGILRASPGV EGPEGGRFQP LPRLHVHQLG LRPHLMSTVS VTEKSASTTL SVGSQGGGVT  780
FGQKQKQKQK QKQSRGRRAV VWSGPFCSGR PGDLGLGLGG CTAGRKEKKR KANPISNCQI  840
K
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678334936
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087880.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_027184702.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotO042920.0ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBLS8D0Z30.0S8D0Z3_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]