PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678334876
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 886aa    MW: 97763.7 Da    PI: 5.66
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678334876genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.1e-194389148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd l+ ++vk++G + W+tIa++++ gR +kqc++rw+++l
        678334876 43 KGPWSKEEDNLITELVKRYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 89
                     79******************************.*************97 PP
2Myb_DNA-binding41.33.6e-1395137145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+ E++ l++a++ +G++ W+   + ++ gR+++ +k++w+
        678334876  95 KEAWTQTEELVLIRAHQVYGNK-WAELTKFLP-GRSDNAIKNHWN 137
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-273393IPR009057Homeodomain-like
PROSITE profilePS5129431.6543893IPR017930Myb domain
SuperFamilySSF466895.87E-3040136IPR009057Homeodomain-like
SMARTSM007173.2E-184291IPR001005SANT/Myb domain
PfamPF002491.1E-174389IPR001005SANT/Myb domain
CDDcd001673.41E-164589No hitNo description
PROSITE profilePS5129417.27194144IPR017930Myb domain
SMARTSM007171.2E-1194142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-1994144IPR009057Homeodomain-like
PfamPF002491.7E-1195138IPR001005SANT/Myb domain
CDDcd001672.98E-997137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MTAFMELFST VSGRGIKDSC TSLPRKKLEK DRWQKVLNPE LVKGPWSKEE DNLITELVKR  60
YGAKKWSTIA QHLPGRIGKQ CRERWHNHLN PNIIKEAWTQ TEELVLIRAH QVYGNKWAEL  120
TKFLPGRSDN AIKNHWNSSV KKKLDMYLAS GLLSKFEISH LICHQDQSAA SSSSKAQKSD  180
DSFVRLEGLP ECSQYTGAIC LPQSKDAAIT HPGEKCKVAE ESSPPLCSEY HYAGVEKAAI  240
TIPQEQSEGG DKSLEPDLSL GSETFSWEDL QVDPNELSDM PVLGIGGVPR LPLASLARSD  300
YWEVIPSGKT PDAEGNTDNL HNSTTVQLQE KLVSQSCYVP PDALGTAFLH SSANASLVVN  360
KNLHDQFGYS SPENAETSVT RSTHDGFICS QGSNCSSPDD EFYKIKNLPR LVPANDFVLD  420
PSNDSQCSPS KEADIEGDEQ EAGILCCEPS RFPTLDVPFF NCDLTKSGSD MHQDYSPFGI  480
RQLLMSSMTP LNIWDSPSRD DSPEAILRSA AKIFSSTPSV LKKRHRELVS PLSEKREEKK  540
LEGPSKQEPI SCLTNNFSRL NMKFCEVVSK EGQLSASPKM RNMEASCTGK ENMLPSCLQT  600
DEESRKSLLI SESSTSSKEL KGIEFLNKTS NAAVMDLRNA VKNANDYAGL HVEHQVNYLQ  660
TSSDQNGIKN DREIRISPSQ PANGSCRRLG SVSKLLLLSS SEDARLSAGC SPFAGTKMGD  720
ANFHLATCPG QPQVESTCAA TFAESNGIYI DTPLKRTLES PSAWKSPWFL STFSHGPKIY  780
GDATFEDIGY CLAGDCSYGT LGLMKRLEEH AAATCTDVQE ALTVDTPDKT LKEKCNEHRN  840
KEESPSQSSQ MQQIPPCPPS TFMVERRVLD FSECSSPEIR KASFTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-523014445159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-523014445159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678334876
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089667.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011089827.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011089990.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011090064.10.0transcription factor MYB3R-1 isoform X2
RefseqXP_020553179.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_020553183.10.0transcription factor MYB3R-1 isoform X1
TrEMBLA0A022QNT70.0A0A022QNT7_ERYGU; Uncharacterized protein
STRINGMigut.E01513.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.25e-99myb domain protein 3r-4