PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678334550

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Protein Properties

Length: 300aa MW: 33076.3 Da PI: 6.9485

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678334550	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	109.7	1.4e-34	86	191	1	100
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k ltpsdv+k++rlv+pk++ae++ g + e+++ l ++de g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++++ s+++l++ 678334550 86 FEKPLTPSDVGKLNRLVIPKQHAERNfpmncgGDSCENGVLLNFMDELGKTWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVTFSRHRASTGRLFI 185 99***************************9888999***********************************************9888*** PP EEE-SS CS B3 95 kvfrks 100 +++r+s 678334550 186 GWRRRS 191 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-39	80	195	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.4E-31	82	191	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.65E-29	85	180	No hit	No description
SMART	SM01019	1.1E-27	86	191	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.3E-31	86	191	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.819	86	191	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSVNHYYSEL PDAAAAAAAE GWWSKLSTES APPNHDRSGF RGVFCVPTTA ATAVPPFAFN 60 LNLNNDEDEE LDGGGAPGQE HREMLFEKPL TPSDVGKLNR LVIPKQHAER NFPMNCGGDS 120 CENGVLLNFM DELGKTWRFR YSYWNSSQSY VLTKGWSRFV KEKRLDAGDV VTFSRHRAST 180 GRLFIGWRRR SHNAATSGDG RGTSGQSKNS GPSSGSASTV PRNQANTGGN NSFKTLRLFG 240 VNLEFQDGEP QNPTLLDSPN SGHTNPYRQY YSDHMDMITF SGEPRTGDCF SGGRDNMWGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	8e-48	82	190	4	113	B3 domain-containing transcription factor NGA1
5os9_B	8e-48	82	190	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678334550

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094282.1	4e-75	B3 domain-containing protein At2g36080
Swissprot	Q8GYJ2	1e-60	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A2G9HGL2	1e-70	A0A2G9HGL2_9LAMI; Uncharacterized protein
STRING	Bostr.23794s0488.1.p	5e-63	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3801	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	2e-61	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]