PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678333300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HSF | ||||||||
Protein Properties | Length: 243aa MW: 27594.8 Da PI: 5.5252 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.1 | 3.9e-35 | 10 | 102 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k++++++d++++e++sw+e+g+ fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k +++ weF+++sFk+g+ +ll++i+ 678333300 10 FLIKTFQLVDDQATDEVVSWNETGTGFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKAASDK---------WEFSNDSFKRGHLDLLREIR 97 9***************************************************************9999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ 678333300 98 RRKTT 102 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.98E-33 | 5 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.0E-56 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.5E-36 | 6 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.7E-31 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-20 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-20 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-20 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVARSSPAPF LIKTFQLVDD QATDEVVSWN ETGTGFVVWK TAEFAKDLLP KYFKHNNFSS 60 FVRQLNTYGF RKAASDKWEF SNDSFKRGHL DLLREIRRRK TTAGRNPAAA DNVSSGDDLA 120 SSSTSSPVSK TPDLSSENDQ LRKDNQMLAL ELAETKRRFD DLVAFVTRFV NVDRDEINRV 180 LDAEEQRCVK LFGVVVKRKR EDSFEKKDFC GAGDGGEEIF KVDEPWREIP GFRGETDTSN 240 VCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-24 | 1 | 103 | 11 | 124 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678333300 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099137.1 | 3e-82 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 1e-76 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A2G9GXX1 | 2e-83 | A0A2G9GXX1_9LAMI; Uncharacterized protein | ||||
STRING | EOX91407 | 3e-76 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9991 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-63 | heat shock factor 4 |
Publications ? help Back to Top | |||
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