PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678331508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 198aa MW: 22978.2 Da PI: 9.2846 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 50 | 104 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eq+ Lee F+++++++ +++ LA+kl+L++rqV vWFqNrRa+ k 678331508 50 RKKLKLSSEQTMLLEESFKQHSTLTMVQKKALAEKLNLKQRQVEVWFQNRRARTK 104 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 108.1 | 6.2e-35 | 50 | 140 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk++ls+eq lLEesF+++++L+ +K++la++L+l++rqv+vWFqnrRARtk+kq+E++++aL++++++l+een+rL++e eLr+ l 678331508 50 RKKLKLSSEQTMLLEESFKQHSTLTMVQKKALAEKLNLKQRQVEVWFQNRRARTKLKQTEMECKALRKSCERLMEENRRLSRELLELRSGL 140 69*************************************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.925 | 46 | 106 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-18 | 47 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.9E-16 | 48 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.26E-14 | 50 | 107 | No hit | No description |
Pfam | PF00046 | 1.9E-16 | 50 | 104 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 50 | 112 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 81 | 104 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.9E-10 | 106 | 150 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.3E-7 | 106 | 139 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MPCSDSDDDL VCDTDLRLRP YTTTDSLDRS ELKNGRKQDR CEEDENLSGR KKLKLSSEQT 60 MLLEESFKQH STLTMVQKKA LAEKLNLKQR QVEVWFQNRR ARTKLKQTEM ECKALRKSCE 120 RLMEENRRLS RELLELRSGL RPEAPPYVYH FHKVAGKLTP PPSRDNISIS FDQGGVSGSM 180 EALHTSQLIT HRRRMAGE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 106 | RRARTKLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678331508 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022886873.1 | 1e-40 | homeobox-leucine zipper protein HAT22-like | ||||
Refseq | XP_022886874.1 | 2e-40 | homeobox-leucine zipper protein HAT22-like | ||||
TrEMBL | A0A1Q3AVR8 | 3e-38 | A0A1Q3AVR8_CEPFO; Homeobox domain-containing protein/HALZ domain-containing protein | ||||
TrEMBL | A0A4D9BMB1 | 1e-38 | A0A4D9BMB1_SALSN; Homeobox-leucine zipper protein | ||||
STRING | XP_008801538.1 | 1e-38 | (Phoenix dactylifera) | ||||
STRING | Si014954m | 4e-38 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 6e-30 | HD-ZIP family protein |