PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678331432
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 319aa    MW: 35901.2 Da    PI: 9.479
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678331432genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-13105152148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd++l+  +   G  +W++ ++  g+ R++k+c++rw +yl
        678331432 105 KGPWTLEEDKKLITFILTNGHCCWRALPKLAGLLRCGKSCRLRWTNYL 152
                      79******************************99************97 PP
2Myb_DNA-binding56.47.1e-18161202447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++E++l +d+++qlG++ W++Ia++++ gRt++++k++w+++
        678331432 161 LSEQEEKLVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 202
                      589****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-1996154IPR009057Homeodomain-like
PROSITE profilePS5129411.753100152IPR017930Myb domain
SuperFamilySSF466898.24E-27102199IPR009057Homeodomain-like
SMARTSM007177.3E-11104154IPR001005SANT/Myb domain
PfamPF002491.2E-12105152IPR001005SANT/Myb domain
CDDcd001675.41E-8107152No hitNo description
PROSITE profilePS5129427.224153207IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-25155207IPR009057Homeodomain-like
SMARTSM007172.7E-16157205IPR001005SANT/Myb domain
PfamPF002499.1E-16161202IPR001005SANT/Myb domain
CDDcd001672.69E-12162203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MNPKRAFPFL ESTGAQGTEN PAVRTISVSF RSIRPARNPR FALKRRDSGH RKLKFTKYVK  60
RPLREIPKEP LRARARGSYK GEGERLVAVG KMGRQPCCDK VGLKKGPWTL EEDKKLITFI  120
LTNGHCCWRA LPKLAGLLRC GKSCRLRWTN YLRPDVKRGL LSEQEEKLVI DLHAQLGNRW  180
SKIASHLPGR TDNEIKNHWN THIKKKLRKM GIDPLTHKPL PVEPEPGVPE AAPVEEEKTE  240
GGGAVAVDTD FGVEEVPLTD DPWEILLPSD SNSLPTPSSS SCSSANVLDE PIFPASLSDD  300
DSMWITDSWL DDLLRFEFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-281032075108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678331432
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024974141.13e-89transcription factor MYB20-like
SwissprotQ9C7U75e-87MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A078IFG82e-88A0A078IFG8_BRANA; BnaC09g41280D protein
STRINGCagra.1300s0004.1.p8e-88(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.12e-85myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]