PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678331113

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Dof

Protein Properties

Length: 274aa MW: 29805.4 Da PI: 9.4533

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678331113	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.7e-39	30	89	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ke al+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvP+Ggg+rk+kk 678331113 30 KEPALRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKKL 89 567899***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-26	33	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	33	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.348	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSSGGKPVEN KHQNGSHSSA ARKHVAAREK EPALRCPRCD SPNTKFCYYN NYSLSQPRHF 60 CKTCRRYWTK GGALRNVPIG GGCRKSKKLK CSPRDTAADV GGLRVFPGIS PAMDFQINFQ 120 PRLNPAAPGL CNQFSSVGDQ GSYNFDPYCG GASSSTLMGL GFPLSSGYKP GEGANTTGFQ 180 EMGAQPNLEP PIESLSCINQ DLQWKIQQQR LSSFHQQPLS PLLFQNLEIS NAKQAHRKDN 240 GGTGNLATEW FFGNSYSAVA PSSTGNITNW SSFP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678331113

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021274371.1	4e-83	dof zinc finger protein DOF5.7-like
TrEMBL	A0A061DI28	1e-80	A0A061DI28_THECC; Dof-type zinc finger DNA-binding family protein
TrEMBL	V4SKT9	2e-80	V4SKT9_9ROSI; Uncharacterized protein
STRING	EOX91892	2e-81	(Theobroma cacao)
STRING	XP_006426240.1	3e-81	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5242	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	8e-51	Dof family protein