PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678330589
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 815aa    MW: 88967.2 Da    PI: 5.7773
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678330589genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.9e-21134189156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k
  678330589 134 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 189
                688999***********************************************999 PP
2START197.46.4e-623385631206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela++a++elvk+a++e+p+W +s     e++n+de++++f++  +     +++ea+++sg+v+ ++  lve+l+d++ +W e+++    + +t++vis+
  678330589 338 ELALAATDELVKMAQLEDPLWIRSLetgtEILNEDEYVRNFSSCIGlkpngFTTEASKESGLVIINSLALVETLMDSN-KWAEMFPcivaRTTTTDVISN 436
                57999************************************9888899******************************.********************* PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                g      g lqlm+aelq+lsplvp Rd  f+R+++ql +g+wv+vdvSvd  ++ p   + +  +++lpSg+l+++++ng+skvtwveh +++++ +h+
  678330589 437 GmagtrsGSLQLMQAELQVLSPLVPvRDLHFLRFCKQLADGVWVVVDVSVDAVRETPGcPPAYPTCRRLPSGCLVQDMPNGYSKVTWVEHSEYDASEVHQ 536
                **************************************************************************************************** PP

                HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 180 llrslvksglaegaktwvatlqrqcek 206
                l+r+l++sg  +g  +w atlqrqce+
  678330589 537 LYRPLINSGFGFGGPRWIATLQRQCEC 563
                *************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-21118191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-21120185IPR009057Homeodomain-like
PROSITE profilePS5007117.605131191IPR001356Homeobox domain
SMARTSM003892.4E-19132195IPR001356Homeobox domain
CDDcd000863.76E-19133191No hitNo description
PfamPF000461.2E-18134189IPR001356Homeobox domain
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
PROSITE profilePS5084844.231329566IPR002913START domain
SuperFamilySSF559611.65E-36331563No hitNo description
CDDcd088752.62E-106333562No hitNo description
SMARTSM002341.4E-48338563IPR002913START domain
PfamPF018522.7E-53338563IPR002913START domain
Gene3DG3DSA:3.30.530.205.0E-5456546IPR023393START-like domain
SuperFamilySSF559617.55E-24586802No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MNFGDFLDST GAIAADLPYA NAKIAIAAAA APPPPSANNT NAMPSGAIAH PQLISQTLLP  60
NKPIFNGGST GLSLALQSGM DGQGEVARIG ENFDGSNVGG RRSRDEEHES RSLSDNFDGG  120
SGDDLDGTDK PPRKKRYHRH TPQQIQELEA LFKECPHPDE KQRLELSKRL SLETRQVKFW  180
FQNRRTQMKT QLERHENSLL RQENDKLRAE NMSMREAMRN PMCTNCGGPA IMGEISLEEQ  240
HLRVENARLK DELDRVCVLA GKFLGRPVSS FTNSIAPPYP NSSLELGVGA NGYGAFNTSM  300
LPLDLPDFVA PLPMSTNKPT MNTSAPVDRS LERSMYLELA LAATDELVKM AQLEDPLWIR  360
SLETGTEILN EDEYVRNFSS CIGLKPNGFT TEASKESGLV IINSLALVET LMDSNKWAEM  420
FPCIVARTTT TDVISNGMAG TRSGSLQLMQ AELQVLSPLV PVRDLHFLRF CKQLADGVWV  480
VVDVSVDAVR ETPGCPPAYP TCRRLPSGCL VQDMPNGYSK VTWVEHSEYD ASEVHQLYRP  540
LINSGFGFGG PRWIATLQRQ CECLAILMSS SAPPKDHHTA ISAGGRRSML KLAQRMKNNF  600
CAGVCASSVH KWNKIQTENV DDDVRVMTRK SVDDPGEPQG IVLSAATSVW LPMPPQRLFD  660
FLRNEHLRSE WDILSNGGPM QEMAHIAKGQ DQGNCVSLLR ASAMSANQSN MLILQETCID  720
AAGSLVVYAP VDIPAMHVVM NGGDSSYVAL LPSGFAIVPD GRGDAATKGS LLTVAFQILV  780
NSLPTAKLTV ESVETVNNLI SCTVQKIKAA LRCDS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678330589
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093167.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLS8CZA10.0S8CZA1_9LAMI; Uncharacterized protein
STRINGcassava4.1_001764m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]