PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678330189

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

GRAS

Protein Properties

Length: 844aa MW: 94794.2 Da PI: 6.7761

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678330189	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	361.8	9.7e-111	472	841	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL+ cA+av++++++ a+ +L +++++++p+gd mqR+a+yf+ +L+ar+a+ ++++y++l + s ++ l+a++++ ++P k s++ Nq+ 678330189 472 STLLTLCAQAVAAENTRSANDYLRQIRQHSTPAGDGMQRVAHYFADGLEARMAGAGTQIYNTLINMPIS---AADLLKAYHIYLAACPHRKTSNFFSNQT 568 57899********************************************************999998...89********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 Il+ +e+ +Hi+Df+ +G+QWp++l++L+ Rp+gpps+R T+++ p +g +++++etg+rLa++A+++++pfefn +a+++e+++l+++++++g 678330189 569 ILNVAEKVGSLHIVDFGTLYGFQWPSFLHKLSLRPGGPPSVRFTAIDFPCPGfrPSQRIQETGRRLASYAKKFNIPFEFNG-LAQNWEAITLDDIKMRKG 667 *********************************************99999***********************.6************* PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E+l+Vn+ ++l +lldesv + +rd vLkl+++++P ++v+ ++ hn + Fl+rf eal +ys++fd+l+a ++r+ +er+ +Er+++gre++nv+a 678330189 668 EVLVVNCLYRLRYLLDESVVPDCPRDIVLKLIRKMNPALFVLGIRNGGHNLPFFLTRFREALFHYSSIFDALDAVISRDRHERMLLERVVFGREAMNVIA 767 ****************999************************************************************************* PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 cegaer er et+++W++rl +aG++ +pl+ +++++a+ ++ +++d + ++++ +l++gWk+r +++S+Wr 678330189 768 CEGAERLERPETYKQWHARLARAGLEVLPLNREIMATARNKVKLYHKD-FVIDDDGYWLLQGWKGRISYALSSWR 841 ******************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.544	445	822	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-108	472	841	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence Send to blast
MNENRNDAKP LACVSELDDF GHPVPQGFPL LRNLRVDDGH AGTSYFNSTS SKPSVGQQVQ 60 SSRGDHSQDP GYSVNVLKYL SRHLLEEDVD DKIWHSRTSA DANAASRKLN FDPQVQSSRN 120 DRPQNIDSCD DVLNYMRRFL LEDDVEEKGG NPGAANAVSN KMNSFGSNIT PSVKKDFIDD 180 DIKYMHHHRL KDNVGKKASW MRNPADEPRD MISEVGSCIK HEDIDFSDDV LKYINHILLE 240 EGVEEKTCTF QESEALQATE KSLYEAMWGQ YPNSTHSVYG DSSLHGSDDR QEGTSLSSQS 300 YSQSSNSSGL GHASVDGNAS SPASSFELVQ VHSGRHAVVQ LNEGTILSDG KLVVCLSDGE 360 ESPDRRVMES GIGTQEFSNA STGKRHPHAD DVPGLQEGRS SKQFALHRES SIGDDVFDRV 420 LVFRQEKEES AIREEINKAF NATMQEDQSK DIKGRKRGKK KREAKKNEAD LSTLLTLCAQ 480 AVAAENTRSA NDYLRQIRQH STPAGDGMQR VAHYFADGLE ARMAGAGTQI YNTLINMPIS 540 AADLLKAYHI YLAACPHRKT SNFFSNQTIL NVAEKVGSLH IVDFGTLYGF QWPSFLHKLS 600 LRPGGPPSVR FTAIDFPCPG FRPSQRIQET GRRLASYAKK FNIPFEFNGL AQNWEAITLD 660 DIKMRKGEVL VVNCLYRLRY LLDESVVPDC PRDIVLKLIR KMNPALFVLG IRNGGHNLPF 720 FLTRFREALF HYSSIFDALD AVISRDRHER MLLERVVFGR EAMNVIACEG AERLERPETY 780 KQWHARLARA GLEVLPLNRE IMATARNKVK LYHKDFVIDD DGYWLLQGWK GRISYALSSW 840 RPAP

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence Send to blast

MNENRNDAKP LACVSELDDF GHPVPQGFPL LRNLRVDDGH AGTSYFNSTS SKPSVGQQVQ  60
SSRGDHSQDP GYSVNVLKYL SRHLLEEDVD DKIWHSRTSA DANAASRKLN FDPQVQSSRN  120
DRPQNIDSCD DVLNYMRRFL LEDDVEEKGG NPGAANAVSN KMNSFGSNIT PSVKKDFIDD  180
DIKYMHHHRL KDNVGKKASW MRNPADEPRD MISEVGSCIK HEDIDFSDDV LKYINHILLE  240
EGVEEKTCTF QESEALQATE KSLYEAMWGQ YPNSTHSVYG DSSLHGSDDR QEGTSLSSQS  300
YSQSSNSSGL GHASVDGNAS SPASSFELVQ VHSGRHAVVQ LNEGTILSDG KLVVCLSDGE  360
ESPDRRVMES GIGTQEFSNA STGKRHPHAD DVPGLQEGRS SKQFALHRES SIGDDVFDRV  420
LVFRQEKEES AIREEINKAF NATMQEDQSK DIKGRKRGKK KREAKKNEAD LSTLLTLCAQ  480
AVAAENTRSA NDYLRQIRQH STPAGDGMQR VAHYFADGLE ARMAGAGTQI YNTLINMPIS  540
AADLLKAYHI YLAACPHRKT SNFFSNQTIL NVAEKVGSLH IVDFGTLYGF QWPSFLHKLS  600
LRPGGPPSVR FTAIDFPCPG FRPSQRIQET GRRLASYAKK FNIPFEFNGL AQNWEAITLD  660
DIKMRKGEVL VVNCLYRLRY LLDESVVPDC PRDIVLKLIR KMNPALFVLG IRNGGHNLPF  720
FLTRFREALF HYSSIFDALD AVISRDRHER MLLERVVFGR EAMNVIACEG AERLERPETY  780
KQWHARLARA GLEVLPLNRE IMATARNKVK LYHKDFVIDD DGYWLLQGWK GRISYALSSW  840
RPAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-50	458	842	1	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678330189

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077208.1	0.0	scarecrow-like protein 14
Refseq	XP_020549007.1	0.0	scarecrow-like protein 14
Refseq	XP_020549008.1	0.0	scarecrow-like protein 14
TrEMBL	S8DQR7	0.0	S8DQR7_9LAMI; Uncharacterized protein
STRING	Migut.F00778.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-169	GRAS family protein