PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678330002
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 271aa    MW: 29524.3 Da    PI: 5.0913
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678330002genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19130179255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa a+++ ++k++g
  678330002 130 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAAMAYDKEALKYRG 179
                7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-32130188IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22130188IPR016177DNA-binding domain
SMARTSM003801.1E-35130193IPR001471AP2/ERF domain
PROSITE profilePS5103224.605130187IPR001471AP2/ERF domain
CDDcd000182.54E-30130189No hitNo description
PfamPF008472.8E-12130179IPR001471AP2/ERF domain
PRINTSPR003671.2E-11131142IPR001471AP2/ERF domain
PRINTSPR003671.2E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAMGGFSLKS PEKNGILKVA NPGDDDSFGS WDEQEFAGNG GDDLIPGVRR DREMTSMVSA  60
LARVVAGESD NAAAGGESPT RFSPLCKRGR EEEESSSSGA PQTLIRSAES TVYTYTAETP  120
GFTTEPPGRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF DTAEAAAMAY DKEALKYRGS  180
KAKLNFPENV KLLDGHNHRR RSHNEPSPVV PSHGSAQFQE NEANYSMYSS LEDAAAEFYP  240
PPPPGISDIW PESTGSKSSG DDFSWKDTPS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-24128190366ATERF1
3gcc_A7e-24128190366ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678330002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090449.16e-42ethylene-responsive transcription factor ABR1-like
RefseqXP_015073144.11e-42ethylene-responsive transcription factor ERF110-like
TrEMBLA0A2G9IAR92e-41A0A2G9IAR9_9LAMI; Uncharacterized protein
STRINGXP_004160502.11e-40(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-29ethylene response factor 110