PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678329147 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27020.9 Da PI: 9.2677 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l++ v+q+G+g +W + +++ g++R++k+c++rw++yl 678329147 14 KGPWSSEEDAKLKQFVEQFGNGgNWISLPKKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 28.7 | 3e-09 | 70 | 137 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqk 46 ++ eEd ++ + + G++ +W+ a ++ gRt++++k++w++ 678329147 70 GFSDEEDRIICALYAAIGSRsagitrtrihqtvnlftligtnvddRWSIMATQLP-GRTDNDIKNYWNT 137 58999999999999999999999999999999999999*****************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.57 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-21 | 14 | 66 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.70E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 8.246 | 63 | 139 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.4E-8 | 67 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-6 | 69 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-20 | 70 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.78E-5 | 104 | 137 | No hit | No description |
SuperFamily | SSF46689 | 1.08E-21 | 111 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSSE EDAKLKQFVE QFGNGGNWIS LPKKAGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSDEEDRIIC ALYAAIGSRS AGITRTRIHQ TVNLFTLIGT NVDDRWSIMA 120 TQLPGRTDND IKNYWNTKLK KKLVMKMVTQ PSFLQSHRDI GTLLSFQIAR SESFPGLGSF 180 IFSNQSSPYQ GLHLPSEGFI SNGRYQQEMG CFQGILPDEN ACDLPLQAAE TDIWGMHYPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-20 | 14 | 143 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678329147 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090100.1 | 1e-72 | transcription factor RAX2-like | ||||
Swissprot | Q9FKL2 | 2e-65 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A251VDY7 | 2e-70 | A0A251VDY7_HELAN; Putative homeodomain-like protein | ||||
STRING | XP_010684035.1 | 9e-70 | (Beta vulgaris) | ||||
STRING | PGSC0003DMT400009926 | 9e-70 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 1e-62 | myb domain protein 68 |
Publications ? help Back to Top | |||
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