PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678329049
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 786aa    MW: 87592.9 Da    PI: 7.2092
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678329049genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.9e-23161262199
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k+lt sd++++g +++p++ ae++      +k++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv +++L +gD v+F   + +++ l+++
  678329049 161 FCKTLTASDTSTHGGFSVPRRAAEDCfppldYNKPRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVGQKNLMSGDAVLFL--RGEGGDLRLG 258
                99****************************844556678*************************************************..4489999**9 PP

                EE-S CS
         B3  96 vfrk 99 
                ++r+
  678329049 259 IRRA 262
                9986 PP
2Auxin_resp94.31.9e-31287366182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a+s+k+ F+v+YnPr s ++F+++++k++k++ ++v vG++fk++f+ +ds++r+  G+v+g+sd+dp+rWpnSkW +L
   678329049 287 VADALSNKTSFSVFYNPRGSCPDFIIPYQKYVKSTATSVPVGTKFKLRFDFDDSPKRS--GVVTGISDMDPYRWPNSKWNCL 366
                 6889*****************************************************9..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-43151278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-38154275IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-21159261No hitNo description
PROSITE profilePS5086312.76161263IPR003340B3 DNA binding domain
PfamPF023628.9E-21161262IPR003340B3 DNA binding domain
SMARTSM010192.8E-22161263IPR003340B3 DNA binding domain
PfamPF065071.8E-25288366IPR010525Auxin response factor
PROSITE profilePS5174521.217657741IPR000270PB1 domain
SuperFamilySSF542774.12E-10660736No hitNo description
PfamPF023096.9E-6704742IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MEIDLNHAVS GAEKKKCIHG NCVCGCCSST STSSCSSNAS SPCSVSAPLI CKELWHACAG  60
PLTSLPKKGN MVVYFPQGHL EQTFSASSLP PMEINTFGVP PHVFCRIVDV QLLANKENDE  120
VFTKLTLLPQ QEVMTTDFEN YDSGDEEGTN VLPSKSTSHM FCKTLTASDT STHGGFSVPR  180
RAAEDCFPPL DYNKPRPSQE LIAKDLHGVE WKFRHIYRGQ PRRHLLTTGW SIFVGQKNLM  240
SGDAVLFLRG EGGDLRLGIR RAVHPRNSLP DSVTNRQSSY VNVLSPVADA LSNKTSFSVF  300
YNPRGSCPDF IIPYQKYVKS TATSVPVGTK FKLRFDFDDS PKRSGVVTGI SDMDPYRWPN  360
SKWNCLVVRW DDDVLGHHHD RVSPWEISFP PNCTPFRVES SPTPRHKKLR SDMQGTPHGC  420
SLPGRHGILD FNESIRPSEV LQGQENGVSV PSLYGRDPRS FRLQQTVSSR MMERSSYNEL  480
LPNHAPPTTF TGFLESNWFP RVLQGQEICS LRSLTGNREI KHGAWSKPEL NPRPQMSFYP  540
LASEGVRNVT ISQKGVYVME PQSPLTPTTI FNAQPLSHTL AETSLRCRNL VEIDGVSRLQ  600
YEQGAVEKTP APEASTVHNS RSGGDSDKEK NPSRCKIFGF SLTDDPETRS LHGSTKRRCT  660
KVHKQGSLVG RAIDLSRLNN YDELLIELER LFSMEGLLRD PKEGWCVLYM DKDNDMMVVG  720
DDPWHEFVEV VTKLHLYTQQ EVEKLTIITN SDDTKSCLEE APPAPDASKS PSVGQLDSSS  780
PATLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-108353872352Auxin response factor 1
4ldw_A1e-108353872352Auxin response factor 1
4ldw_B1e-108353872352Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338343DSPKRS
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678329049
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089883.10.0auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A191T8T20.0A0A191T8T2_SALMI; Auxin response factor
STRINGPGSC0003DMT4000208390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]