PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678328793
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Dof
Protein Properties Length: 275aa    MW: 29875.2 Da    PI: 6.7045
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678328793genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.95.2e-393188461
     zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
               +alkcprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k++
  678328793 31 QALKCPRCDSQNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRA 88
               789****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-292487IPR003851Zinc finger, Dof-type
PfamPF027012.3E-333287IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.7493387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQDIHAVGGG AFLGAGDRRM RPLNHANNHL QALKCPRCDS QNTKFCYYNN YNLSQPRHFC  60
KNCRRYWTKG GVLRNVPVGG GCRKTKRANQ KKGAAGERTQ STSTTDSSNH RIMGGSSTAP  120
VEDPSATTKA ASISAAAYDF PDSSFFHANP SFDNRQPLVS HPPDAQIFPS EIGGYTDLMG  180
PAAVSSEMMA YGAVPYPQVF HDSTSTLESC NPAVDEIKLP EMEREINSVD MGGVPEWLSG  240
GVGPPQGLFD LTAAVDPVYW SQPPWTDNDQ PSLNF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678328793
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078663.17e-75dof zinc finger protein DOF5.4
TrEMBLS8CHK73e-77S8CHK7_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.12e-47OBF binding protein 4