PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678324941
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 182aa    MW: 19996.8 Da    PI: 10.4876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678324941genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-1768116355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r +k +g+WvAeIr+p   +kr+r++lg++ ++  Aa+a++ a  +l+g
  678324941  68 YRGIRMRK-WGKWVAEIREP---NKRTRIWLGSYSSPIAAARAYDTALFYLRG 116
                9*****99.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.24E-2766126No hitNo description
PROSITE profilePS5103221.85267124IPR001471AP2/ERF domain
PfamPF008472.0E-1167116IPR001471AP2/ERF domain
SMARTSM003802.4E-3767130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2967125IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2167125IPR016177DNA-binding domain
PRINTSPR003672.4E-116879IPR001471AP2/ERF domain
PRINTSPR003672.4E-11106126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGVSKTKTRR RVGLVGLLGS RVPPPPPPPP LQPPSNPRSE FHCTRMESAS PPSGSAVGKG  60
KHHSGKIYRG IRMRKWGKWV AEIREPNKRT RIWLGSYSSP IAAARAYDTA LFYLRGPTAR  120
LNFPEHVLDD APPMDLSAAA IRKKATEVGT MVDALYSTPP SRAAPKPDLN EYPSPEDDPE  180
DH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1565127366ATERF1
3gcc_A6e-1565127366ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678324941
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071928.15e-57ethylene-responsive transcription factor ERF010
SwissprotQ9SNE12e-42ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A2G9FZ016e-58A0A2G9FZ01_9LAMI; Uncharacterized protein
STRINGSolyc04g078640.1.13e-56(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.12e-44cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]