PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678324417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HSF | ||||||||
Protein Properties | Length: 216aa MW: 24315.4 Da PI: 11.0478 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 78.9 | 8.3e-25 | 17 | 76 | 2 | 61 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 Fl+k+y++++d+++++++sw +g +fvv+++ efa+++Lp+yFkhsnf+SFvRQLn+Y 678324417 17 FLMKTYQLVDDPATDHIVSWGGTGATFVVWKPPEFARDLLPNYFKHSNFSSFVRQLNTYK 76 9**********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.8E-27 | 9 | 77 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-27 | 13 | 207 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.1E-15 | 17 | 40 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-20 | 17 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.67E-23 | 17 | 76 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 6.1E-15 | 55 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.1E-15 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGTDLILESQ RSVPGPFLMK TYQLVDDPAT DHIVSWGGTG ATFVVWKPPE FARDLLPNYF 60 KHSNFSSFVR QLNTYKRVQA SAGGDPPEED RGVSGAILLR RASEGGKLGF AVGRQRLPPD 120 DRRVLRRSPG RQPTPEKKQQ HPPLRAGPHE ATLQRDPTPF PQPRETKSQK LRPDESGHRI 180 GRTRRPRFPP DSTLRSSIVF QKEDSRRMEG EGRTGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-15 | 12 | 90 | 16 | 97 | Heat shock factor protein 1 |
5hdg_A | 1e-15 | 17 | 90 | 10 | 87 | Heat shock factor protein 1 |
5hdn_A | 1e-15 | 17 | 90 | 10 | 87 | Heat shock factor protein 1 |
5hdn_B | 1e-15 | 17 | 90 | 10 | 87 | Heat shock factor protein 1 |
5hdn_C | 1e-15 | 17 | 90 | 10 | 87 | Heat shock factor protein 1 |
5hdn_D | 1e-15 | 17 | 90 | 10 | 87 | Heat shock factor protein 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678324417 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 7e-37 | heat shock transcription factor B4 |