PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678324252
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 311aa    MW: 35589 Da    PI: 7.001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678324252genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-082972344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     rWT+eE + + +a +++  +   +W ++a++++ g+t  ++   +
        678324252 29 RWTAEENKAFEHALALYDEKmpdRWQRVAAMVP-GKTVWDVMKQY 72
                     9********************************.***87766655 PP
2Myb_DNA-binding43.95.3e-14138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
        678324252 138 PWTEDEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 182
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.3552578IPR017884SANT domain
SMARTSM007174.7E-92678IPR001005SANT/Myb domain
SuperFamilySSF466892.37E-112883IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-42974IPR009057Homeodomain-like
PfamPF002493.0E-62973IPR001005SANT/Myb domain
CDDcd001676.73E-82975No hitNo description
Gene3DG3DSA:1.10.10.603.1E-12130190IPR009057Homeodomain-like
PROSITE profilePS5129420.841131187IPR017930Myb domain
SuperFamilySSF466893.36E-16133186IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-17134186IPR006447Myb domain, plants
SMARTSM007173.1E-12135185IPR001005SANT/Myb domain
PfamPF002491.9E-12138182IPR001005SANT/Myb domain
CDDcd001675.94E-10138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNWGMEILLP NSHVSSYSWL AEDSSRSTRW TAEENKAFEH ALALYDEKMP DRWQRVAAMV  60
PGKTVWDVMK QYKELEDDVS TIEAGLFPVP GYDTSSPYML QWSGSGQRYH SGIKPPYFCR  120
KSSAAARPID HERKRGVPWT EDEHKLFLMG LKKYGKGDWR NISRNFVITR TPTQVASHAQ  180
KYFIRQLNSG KDKRRASIHD ITTLSLEEDV KAPIESTKKS LSPEQSPVQK HPFHCSQFTN  240
ELCGSQGEAN ILGSLPFESS SYWQHLQGEA AEESLVAAQN MLLMMQTGFQ YPAHERGSFY  300
CKEEAHHFDF A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1530991180RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678324252
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080854.11e-117transcription factor DIVARICATA isoform X1
RefseqXP_020550520.11e-117transcription factor DIVARICATA isoform X2
SwissprotQ8S9H71e-109DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G9G9Y21e-109A0A2G9G9Y2_9LAMI; Zuotin
STRINGGorai.009G093700.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-100Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]