PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678323810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Trihelix | ||||||||
Protein Properties | Length: 513aa MW: 58323.4 Da PI: 4.9277 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 90.1 | 2.4e-28 | 47 | 130 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r++me ++r+++ k+plW+evs+ ++e g++rs+k+Ckek+en++k++k++ke +++ s++ +++++f+qle 678323810 47 RWPQEETLALLKIRSDMEMAFRDSAHKAPLWDEVSRELAELGYHRSAKKCKEKFENVSKYHKRTKEARSS--SQKARSYRFFEQLE 130 8********************************************************************9..577778******97 PP | |||||||
2 | trihelix | 100.4 | 1.4e-31 | 349 | 433 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev +Li +++++++ + ++ k+plWee+s+ mr++g+ r++k+Ckekwen+nk+yk++k+++k+r +e+s+tcpyf+ l+ 678323810 349 RWPKAEVETLIMLKTDLDSMYHDNGPKGPLWEEISSSMRKHGYDRTAKRCKEKWENINKYYKRVKDSNKRR-PEDSKTCPYFNLLD 433 8********************************************************************97.99********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.969 | 40 | 104 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.3E-4 | 44 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 7.7E-20 | 46 | 130 | No hit | No description |
CDD | cd12203 | 1.53E-22 | 46 | 111 | No hit | No description |
SMART | SM00717 | 0.02 | 346 | 408 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.7E-22 | 348 | 435 | No hit | No description |
PROSITE profile | PS50090 | 7.259 | 348 | 406 | IPR017877 | Myb-like domain |
CDD | cd12203 | 3.21E-26 | 348 | 413 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-4 | 349 | 405 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MLEDSVLYEN SSLGAEGVAV AGPDAVMVEL GNECGFDDGE RNSSGNRWPQ EETLALLKIR 60 SDMEMAFRDS AHKAPLWDEV SRELAELGYH RSAKKCKEKF ENVSKYHKRT KEARSSSQKA 120 RSYRFFEQLE LLDSNFCIPS APMNQISSYS MEMVPTPSTT VMTKAVNSSQ ELNLPCTDRQ 180 HDADFMLAPT STELSSEESE GSAKKKRKLV DYFERLMKDV LEKQEELQNK FLEAIEKCEK 240 ERIAREEAWK VQEMARIKRE KELFAQERAM AAAKDAAMLA FLQKLTQQTI PVQMPDILTT 300 LFDKPSENLG NALEKHSEFQ ENVVGESSTR IERQDNSAGE STILMSSSRW PKAEVETLIM 360 LKTDLDSMYH DNGPKGPLWE EISSSMRKHG YDRTAKRCKE KWENINKYYK RVKDSNKRRP 420 EDSKTCPYFN LLDSIYANKS KKLECISDKG GSNMKPEQIL MQMIDQQPQA SLGEYGESDA 480 LHQDDDVEEE QGDNSGSGYQ IIGNNLSSVT SLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 208 | KKKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678323810 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099803.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A2G9H252 | 0.0 | A0A2G9H252_9LAMI; Transcription factor GT-2 | ||||
STRING | XP_009626647.1 | 1e-161 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9794 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-111 | Trihelix family protein |