PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678322207
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 292aa    MW: 31736.1 Da    PI: 7.7656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678322207genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.3e-06155196954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++ RR +iN+++  L++++P +    +k +  + +L ++++Y++sL
  678322207 155 DQARRGKINERLKLLKDIVPGC----CKSMGMVVMLDETINYVQSL 196
                578******************8....677999***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.153146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-4152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-12155213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-11155214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.27E-7158201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNPQLPFPMN DSLFMDQFPG LEALSAPPYL TSGSGSLHCV AGEGNHLPCK LSPGELAAVF  60
YGETGYQEMK RKGAMGSTSE TTSSHSRSTD GSRRSKKARK EDDGKHKDVV HVRARRGQAT  120
DSHSLAERVK LHIIPPFCSP FEKGLKNHLI ADVDDQARRG KINERLKLLK DIVPGCCKSM  180
GMVVMLDETI NYVQSLRNQI EFLSMQLAAA STPVDEYNLD ALQCLSASLS YGDPLQLPPG  240
KGCTLQCAVK RVALTSSEAA MAFTGDRQGS DAVFDRDFAE KTRQTSGVPL SV
Cis-element ? help Back to Top
SourceLink
PlantRegMap678322207
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPOPTR_0012s05210.12e-40(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.27e-36BR enhanced expression 3