PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678321326 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 35927.2 Da PI: 5.5964 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 8.1e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+lv++++++G+g+W+t ++ g+ R++k+c++rw +yl 678321326 14 KGPWTEDEDEKLVRYIREHGPGNWRTLPKNAGLERCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e ++++++ lG++ W++Ia++++ gRt++++k++w+++ 678321326 67 RGRFSFEEEETIIQLHRVLGNK-WSAIASRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.479 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.14E-13 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.35 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.63E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGRSPCCDRS GLKKGPWTED EDEKLVRYIR EHGPGNWRTL PKNAGLERCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHRVLGNKWS AIASRLPGRT DNEIKNYWNT HIRKRLMKMG 120 IDPVTHAPRL DFLDISSLLL APRPEVSNLA HLLNSNPQML KLALGLLKAS HENPYSVLKQ 180 IEADEFGQAE SDVHGHGSFV QLQPTHIENG CSPEMAPSSA QSFQGISWDS TPQPFQDTSF 240 YELPGSWSGV PDQSHPQNST FNVNLSYESV FSTPLSSPET WNSSSSAAII GRAVEQQDDF 300 SGSVLGLELL EEFDLEDFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 8e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 8e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678321326 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424703.1 | 1e-106 | PREDICTED: transcription factor MYB80-like | ||||
Swissprot | Q9LDR8 | 2e-91 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A0S3SHG1 | 1e-105 | A0A0S3SHG1_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA13G37820.1 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 9e-94 | MYB-like 102 |
Publications ? help Back to Top | |||
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