PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678321123
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 260aa    MW: 28461.9 Da    PI: 7.9924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678321123genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.8e-111155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT eEd+l+ +a+  +  +   +W+++a++++ g++ +++k ++ 
        678321123 11 SWTREEDKLFERAIVTYRDEapdRWEKVASEVP-GKSVEEVKQHYE 55
                     7*****************99*************.**********96 PP
2Myb_DNA-binding41.62.9e-13104148347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W+ I+r +  +Rt+ q+ s+ qky
        678321123 104 AWTEDEHRLFLLGLEKYGKGDWRGISRNFVVTRTPTQVASHAQKY 148
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.117762IPR017884SANT domain
SMARTSM007178.1E-11860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-61058IPR009057Homeodomain-like
SuperFamilySSF466891.72E-121066IPR009057Homeodomain-like
PfamPF002491.1E-91154IPR001005SANT/Myb domain
CDDcd001671.13E-101158No hitNo description
PROSITE profilePS5129417.05196153IPR017930Myb domain
SuperFamilySSF466899.33E-1799154IPR009057Homeodomain-like
SMARTSM007172.2E-10101151IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-17101151IPR006447Myb domain, plants
PfamPF002493.5E-11104148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10104147IPR009057Homeodomain-like
CDDcd001673.18E-10104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MPAGEQSSCS SWTREEDKLF ERAIVTYRDE APDRWEKVAS EVPGKSVEEV KQHYELLIED  60
VNRIDSGFVE LPCYSVCSDG FDESGQGGTK SLSRSDQERR KGIAWTEDEH RLFLLGLEKY  120
GKGDWRGISR NFVVTRTPTQ VASHAQKYFI RLNSMNKNRR RSSIHDITSV NTGEVSVPQG  180
PITGKTNAHQ PSMGVYGTGQ CIGGPAVGTP VNLPAPGHMA YGLGAPVPGS AVGMAPMARP  240
QVVSLGHESV TRGTKSWQNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-16374273RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678321123
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070471.11e-117transcription factor SRM1
RefseqXP_011070472.11e-117transcription factor SRM1
RefseqXP_020547442.11e-117transcription factor SRM1
RefseqXP_020547443.11e-117transcription factor SRM1
SwissprotQ9FNN61e-100SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A067G2J51e-112A0A067G2J5_CITSI; Uncharacterized protein
STRINGXP_006484484.11e-112(Citrus sinensis)
STRINGXP_006437648.11e-112(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-102MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]