PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678320775
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 583aa    MW: 64384.7 Da    PI: 5.205
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678320775genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.81.7e-331382282101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d++++ ++sws +++sf v+d+ efa+ +Lp+yFkh+nfaSF+RQLn+YgF+k++ e+         weF+++ F k++++ll++i+
     678320775 138 FLLKTYEMVDDSKTDAIVSWSVSNKSFTVWDPPEFARVLLPTYFKHNNFASFIRQLNTYGFRKIDPER---------WEFANDDFMKDHQHLLKNIH 225
                   9********************999*****************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     678320775 226 RRK 228
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF054982.5E-1343105IPR008801Rapid ALkalinization Factor
SMARTSM004153.5E-58134227IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-36134227IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-33134227IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-18138161IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-29138227IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-18176188IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340177201IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-18189201IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAAKFTSFLL YFIFFCFSLF AGSRIAESSM ADSMASYGGD DFEALMESQT SARFLQEQRN  60
YIVYDVLKKD RPICRGEPGS PYSRGSGCLP PPSNTYHRPC YTYYRKSGGV CERGGNRSMG  120
SMDGGASAGG GGGSPAPFLL KTYEMVDDSK TDAIVSWSVS NKSFTVWDPP EFARVLLPTY  180
FKHNNFASFI RQLNTYGFRK IDPERWEFAN DDFMKDHQHL LKNIHRRKPI HSHSQPPVSI  240
DPERAAYEEE VDKLAHEKGV LEGKILKYLE QESATKAQLE ILIHRVSSIE QRQEKLLAFM  300
DKALQNPDFV TELALKLESM NFSAYKKKRR ILHLENAEAA PEDPVIGYRS SSLSELGDSS  360
QQNLSSILRL ELLPAVSDVN LISSIVISPN DNEASTGWRR ESVSKDAHAK GAAFFRASEL  420
SDHGASFNLN ANSPSPGRLG SDSPVLHSIQ SSASIDAGGD DHLSHLLDLT LASSSVELSR  480
SQKPVESTQP SEDMFAVARL DSNADASGDE GPSQDSAVDN TPTLFASCDA PSSDPPALAT  540
VSARVNDVFW EQFLTERPGC SDNEEANFSH LTNYNSRMER LTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2412022710129Heat shock factor protein 1
5d5v_B3e-2412022710129Heat shock factor protein 1
5d5v_D3e-2412022710129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325329KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678320775
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073785.11e-164heat stress transcription factor A-5
TrEMBLA0A2G9GT271e-160A0A2G9GT27_9LAMI; Heat shock transcription factor
STRINGPGSC0003DMT4000118711e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94612125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-94HSF family protein