PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678319966
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 182aa    MW: 20076.1 Da    PI: 8.7142
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678319966genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26054.14.5e-172127196
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.........................edamsslvyeAearar 70 
                +C++C+ lr++Ca+dCvl+  +     p +q++++++++k++G++ +++llk++  + r                         +d+  sl+ eA+ ra 
  678319966   2 SCNGCRALRKACAEDCVLRDSLlliesPMAQANATRFLAKFYGRTGLMNLLKQAAADLRcrrflrnlcdlyfsslknfcfgfisTDVYLSLLSEACGRAI 101
                6********************99*******************************99998889************************************** PP

     DUF260  71 dPvyGavgvilklqqqleqlkaelal 96 
                +P++G++g++ +++++ ++ +++++l
  678319966 102 NPIEGSLGLYAAGEWKRCEDAVQAVL 127
                ****************9999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.3151132IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-8260IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSCNGCRALR KACAEDCVLR DSLLLIESPM AQANATRFLA KFYGRTGLMN LLKQAAADLR  60
CRRFLRNLCD LYFSSLKNFC FGFISTDVYL SLLSEACGRA INPIEGSLGL YAAGEWKRCE  120
DAVQAVLDGG PLLKQVTEDG KSEWQFPVVS LGGCEIRNVS RGVGSSSGSQ NNFAQRRRRV  180
KE
Cis-element ? help Back to Top
SourceLink
PlantRegMap678319966
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-38LOB domain-containing protein 41