PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678319163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 507aa MW: 55836.6 Da PI: 4.7399 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 281.3 | 2.8e-86 | 151 | 506 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 v+ L+++A+++++++++l q +Larl+e+ +sp g+p+qR+a+y++eAL+ l++ +p++ + + +++++a+k+f +sPi+ f+ +taNq 678319163 151 VDELIRFADCIETNSFQLGQLILARLNERlSSPVGKPLQRAAFYMKEALQLLLSS--------TTPTHRNAAEIVQTIKAHKIFAAMSPIPLFASFTANQ 242 678*************************99************************9........455555556799************************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 a+lea++g++ vH++Dfdi+ G+QW+++++++a+ e ppslRi +++s e s+ e + ++++L++fA+e++++f+++++ +++ l++++L+++ 678319163 243 AVLEAIDGARDVHVVDFDIGFGGQWASFMKEIAEMHiagEAPPSLRISAIVSGE--SEIESNLVRDNLTQFAREVNIDFRIDFIPIPSFQRLSFKALKFN 340 *********************************988888889**********55..999************************9999************* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres...eerikvErellg 291 E++aV l+ +++r s ++L+ + +lsP vvv+v+ e h+++sF + ++ +e+ysal++s+ +a++ + ++ +k+E ++l 678319163 341 DCEKVAVVLSPAIFRQI------GS---TFLNDLPHLSPAVVVHVDMEgqFGHTTSSFRQAVITGIEFYSALLESIeAANMIG-ApgwDWIRKIETFVLY 430 ***********999997......44...9******************944557999********************5444433.3357999********* PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++iv+ v g++ k re l +aG++p+ +s++a+ qa++llrk++++g++v +++g++v++W++r+L ++SaWr 678319163 431 PKIVQGVEGIGRN-------GTKARETLAAAGLRPIGISQFAEFQAECLLRKFEVRGFQVVKRQGEMVICWQERALGALSAWR 506 *******999988.......3445789*******************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.072 | 124 | 486 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.8E-84 | 151 | 506 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MKVPFTIETH TPSKTSRNCA GATGVPVTDS IPSAAYEPKS VLDLRGSPRS ASAELVVPEL 60 GDNRHPASHD IINPDSQFED WDSWMTELGL HDEEDDDFPA SNAPTIPQSL CPDPPDFPPL 120 YPGPEFAVLP DFPAYTAAPA VPPWNVGLEY VDELIRFADC IETNSFQLGQ LILARLNERL 180 SSPVGKPLQR AAFYMKEALQ LLLSSTTPTH RNAAEIVQTI KAHKIFAAMS PIPLFASFTA 240 NQAVLEAIDG ARDVHVVDFD IGFGGQWASF MKEIAEMHIA GEAPPSLRIS AIVSGESEIE 300 SNLVRDNLTQ FAREVNIDFR IDFIPIPSFQ RLSFKALKFN DCEKVAVVLS PAIFRQIGST 360 FLNDLPHLSP AVVVHVDMEG QFGHTTSSFR QAVITGIEFY SALLESIEAA NMIGAPGWDW 420 IRKIETFVLY PKIVQGVEGI GRNGTKARET LAAAGLRPIG ISQFAEFQAE CLLRKFEVRG 480 FQVVKRQGEM VICWQERALG ALSAWRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-21 | 158 | 505 | 27 | 378 | Protein SCARECROW |
5b3h_A | 4e-21 | 158 | 505 | 26 | 377 | Protein SCARECROW |
5b3h_D | 4e-21 | 158 | 505 | 26 | 377 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678319163 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847887.1 | 1e-175 | PREDICTED: scarecrow-like protein 15 | ||||
TrEMBL | A0A2G9I453 | 0.0 | A0A2G9I453_9LAMI; Uncharacterized protein | ||||
STRING | Migut.L00296.1.p | 1e-175 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8305 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-115 | GRAS family protein |