PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678319163
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 507aa    MW: 55836.6 Da    PI: 4.7399
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678319163genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.32.8e-861515062374
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                v+ L+++A+++++++++l q +Larl+e+ +sp g+p+qR+a+y++eAL+  l++         +p++ +  + +++++a+k+f  +sPi+ f+ +taNq
  678319163 151 VDELIRFADCIETNSFQLGQLILARLNERlSSPVGKPLQRAAFYMKEALQLLLSS--------TTPTHRNAAEIVQTIKAHKIFAAMSPIPLFASFTANQ 242
                678*************************99************************9........455555556799************************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                a+lea++g++ vH++Dfdi+ G+QW+++++++a+     e ppslRi +++s e  s+ e + ++++L++fA+e++++f+++++   +++ l++++L+++
  678319163 243 AVLEAIDGARDVHVVDFDIGFGGQWASFMKEIAEMHiagEAPPSLRISAIVSGE--SEIESNLVRDNLTQFAREVNIDFRIDFIPIPSFQRLSFKALKFN 340
                *********************************988888889**********55..999************************9999************* PP

       GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres...eerikvErellg 291
                  E++aV l+ +++r         s   ++L+ + +lsP vvv+v+ e    h+++sF + ++  +e+ysal++s+ +a++   +   ++ +k+E ++l 
  678319163 341 DCEKVAVVLSPAIFRQI------GS---TFLNDLPHLSPAVVVHVDMEgqFGHTTSSFRQAVITGIEFYSALLESIeAANMIG-ApgwDWIRKIETFVLY 430
                ***********999997......44...9******************944557999********************5444433.3357999********* PP

       GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ++iv+ v   g++         k re l +aG++p+ +s++a+ qa++llrk++++g++v +++g++v++W++r+L ++SaWr
  678319163 431 PKIVQGVEGIGRN-------GTKARETLAAAGLRPIGISQFAEFQAECLLRKFEVRGFQVVKRQGEMVICWQERALGALSAWR 506
                *******999988.......3445789*******************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.072124486IPR005202Transcription factor GRAS
PfamPF035149.8E-84151506IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MKVPFTIETH TPSKTSRNCA GATGVPVTDS IPSAAYEPKS VLDLRGSPRS ASAELVVPEL  60
GDNRHPASHD IINPDSQFED WDSWMTELGL HDEEDDDFPA SNAPTIPQSL CPDPPDFPPL  120
YPGPEFAVLP DFPAYTAAPA VPPWNVGLEY VDELIRFADC IETNSFQLGQ LILARLNERL  180
SSPVGKPLQR AAFYMKEALQ LLLSSTTPTH RNAAEIVQTI KAHKIFAAMS PIPLFASFTA  240
NQAVLEAIDG ARDVHVVDFD IGFGGQWASF MKEIAEMHIA GEAPPSLRIS AIVSGESEIE  300
SNLVRDNLTQ FAREVNIDFR IDFIPIPSFQ RLSFKALKFN DCEKVAVVLS PAIFRQIGST  360
FLNDLPHLSP AVVVHVDMEG QFGHTTSSFR QAVITGIEFY SALLESIEAA NMIGAPGWDW  420
IRKIETFVLY PKIVQGVEGI GRNGTKARET LAAAGLRPIG ISQFAEFQAE CLLRKFEVRG  480
FQVVKRQGEM VICWQERALG ALSAWRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2115850527378Protein SCARECROW
5b3h_A4e-2115850526377Protein SCARECROW
5b3h_D4e-2115850526377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678319163
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847887.11e-175PREDICTED: scarecrow-like protein 15
TrEMBLA0A2G9I4530.0A0A2G9I453_9LAMI; Uncharacterized protein
STRINGMigut.L00296.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-115GRAS family protein