PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678318602 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23148.9 Da PI: 4.7872 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.1 | 2.5e-14 | 23 | 73 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 sgy+G r + +g+Wv+eIr p++ ++r++lg++ t+e+Aa+a++ +++++g 678318602 23 SGYRGARMRV-WGKWVSEIRLPKK---KTRVWLGTYPTEEMAARAHDVGALAFKG 73 79*****999.**********854...6*******************99888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-8 | 23 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-19 | 23 | 82 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.27E-29 | 23 | 83 | No hit | No description |
SMART | SM00380 | 4.9E-32 | 24 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.563 | 24 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-28 | 25 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-9 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-9 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDERPWILGA GESMAGKVTG RKSGYRGARM RVWGKWVSEI RLPKKKTRVW LGTYPTEEMA 60 ARAHDVGALA FKGKSAVLNF PHLRDSLPRP ASLSPRDVQA AAAKAAAMGG RVVLGSAPDP 120 VMNSAPPSPP SWAPNDADLE TDLGEITDLP CLESSYHEST SSFDNFDAAE EWIPWGAEDD 180 FSDRVGTGVI MINSTFTFGV NGSDTTSFPQ VDYD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 14 | 82 | 3 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678318602 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023739482.1 | 2e-44 | dehydration-responsive element-binding protein 3-like | ||||
Refseq | XP_024972116.1 | 2e-44 | ethylene-responsive transcription factor ERF039-like | ||||
TrEMBL | A0A3G2SFE0 | 7e-44 | A0A3G2SFE0_POGCB; AP2/ERF-domain containing protein | ||||
STRING | EMJ03663 | 1e-42 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 9e-41 | ERF family protein |